The PISA tool at the EBI can calculate surface area contact, interacting
residues and salt bridges/hydrogen bonds between proteins and lots of
other things. And it's easy to use.
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
Alan
Skrzypczak-Jankun, Ewa wrote:
What is the best and user-friendly program to calculate a surface of the
interface between two proteins? Or two domains?
Is there any common criteria how to define boundary for that interface
(other than van der Waals distance)?
Thanks in advance for good tips - Ewa
********************************************************
Dr Ewa Skrzypczak-Jankun Associate
Professor
University of Toledo Office:
Dowling Hall r.2257
Health Science Campus Phone:
419-383-5414
Urology Department Mail Stop #1091 Fax: 419-383-3785
3000 Arlington Ave. e-mail:
[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>
Toledo OH 43614-2598 web:
http://golemxiv.dh.meduohio.edu/~ewa
********************************************************
--
Alan Cheung
Gene Center
Ludwig-Maximilians-University
Feodor-Lynen-Str. 25
81377 Munich
Germany
Phone: +49-89-2180-76845
Fax: +49-89-2180-76999
E-mail: [EMAIL PROTECTED]
