Bernhard - In case you're still trying to follow the convoluted arguments in my previous long answer, here's the short answer (for your summary!):
Replace the word 'new' (twice) in this sentence in Phil's AC 2001 article with the word 'fixed': "... rotate by gamma around z, then by beta around the new y, then by alpha around the new z again.". Then everything is fine & we all agree! Your problems with Y1, Z2 etc in Eleanor's description are resolved because the axes never move. In fact it's not clear to me why we need ZO, Y1 & Z2 at all because Z2 = Z0 = Z and Y1 = Y. So the most concise statement is the one in my previous email: R = Rz(a).Ry(b).Rz(g) ... and please don't mention rotated (or 'new' etc) axes in this context ever again! -- Ian > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Bernhard Rupp > Sent: 13 August 2007 23:07 > To: [EMAIL PROTECTED] > Cc: CCP4BB@JISCMAIL.AC.UK > Subject: RE: [ccp4bb] CCP4 rotation convention > > Hmmm....this explanation seems to add another discrepancy - I > think the > connection to the physical process is lost - > I cannot rotate first about something I don't have yet. > > Let me try to interpret what E wrote: > > "I just have to write out matrices: > CCP4 rotation matrix: > [R11 R12 R13] [x] > [R21 R22 R23] [y] > [R31 R32 R33] [z] > where x y z are orthogonal coordinates relative to fixed axes" > > I suppose from following this means rotating coordinate > system, i.e. Euler > convention. > > "represents a rotation of ccordinates by first gamma then > beta then alpha > as Phil says:" > > [R11 R12 R13] > [R21 R22 R23] > [R31 R32 R33] > == [R_alpha_about Z0] {R_beta_about_Y1] [ R_gamma_about_Z2] > > in br alternate notation R = RZ0(al)RY1(be)RZ2(ga) > > but this means: apply the first physical rotation about z2 (I > don't have z2 > yet!), > then about Y1 and then alpha about zo > and this is NOT what Phil says: > > Phil says: > "rotate by gamma around z (i.e. zo), then by beta around > the new y (i.e. > y1) , > then by alpha around the new z (i.e. z") again, R = > Rz(al)Ry(be)Rz(ga)" > i.e., in e/br notation R = Rz"(al)Ry(be)Rzo(ga) > > So I think "phil" is correct as far as the physical rotations > go - first > about > the old Z axis which I know, then Y1, then about new Z2. The > sequence of > angles in R > fits the Euler convention. That is consistent. > > I'll get back to the roll-pitch-yaw convention about fixed > X0,Y0, and Z0, > their conversion, > and the Navaza issue once it is sorted out what the > interpretation of R in > Euler convention > truly is - Eleanor R(ZYZ")or Phil R(Z"YZ). > > I'll tally all in a summary > > B 'tin man' R > > Disclaimer This communication is confidential and may contain privileged information intended solely for the named addressee(s). It may not be used or disclosed except for the purpose for which it has been sent. If you are not the intended recipient you must not review, use, disclose, copy, distribute or take any action in reliance upon it. If you have received this communication in error, please notify Astex Therapeutics Ltd by emailing [EMAIL PROTECTED] and destroy all copies of the message and any attached documents. Astex Therapeutics Ltd monitors, controls and protects all its messaging traffic in compliance with its corporate email policy. The Company accepts no liability or responsibility for any onward transmission or use of emails and attachments having left the Astex Therapeutics domain. Unless expressly stated, opinions in this message are those of the individual sender and not of Astex Therapeutics Ltd. The recipient should check this email and any attachments for the presence of computer viruses. Astex Therapeutics Ltd accepts no liability for damage caused by any virus transmitted by this email. E-mail is susceptible to data corruption, interception, unauthorized amendment, and tampering, Astex Therapeutics Ltd only send and receive e-mails on the basis that the Company is not liable for any such alteration or any consequences thereof. Astex Therapeutics Ltd., Registered in England at 436 Cambridge Science Park, Cambridge CB4 0QA under number 3751674