Thanks, Hervé, followed up in the issue link you provided. Roger
-- Roger Bivand Emeritus Professor Norwegian School of Economics Postboks 3490 Ytre Sandviken, 5045 Bergen, Norway roger.biv...@nhh.no ________________________________________ From: Hervé Pagès <hpages.on.git...@gmail.com> Sent: 26 October 2023 19:30 To: Roger Bivand; bioc-devel@r-project.org Subject: Re: [Bioc-devel] flowDensity 1.35.0 in 3.18 still imports archived rgeos Thanks Roger for the reminder. FWIW an issue has been opened on GitHub for flowDensity (see https://github.com/mehrnoushmalek/flowDensity/issues/10<https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fmehrnoushmalek%2FflowDensity%2Fissues%2F10&data=05%7C01%7CRoger.Bivand%40nhh.no%7Cabfb15b780f74001c23e08dbd6493875%7C33a15b2f849941998d56f20b5aa91af2%7C0%7C0%7C638339382214033003%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=5VTVX02oCImq8qLOtcKttjUGUBhTMsPIx1o4ERVc48Y%3D&reserved=0>), and it looks like Mehrnoush was able to make an rgeos-free version of the package. Hopefully he can push it to the Bioconductor git server at git.bioconductor.org soon. Cheers, H. On 10/26/23 05:22, Roger Bivand wrote: As far as I can tell, only flowDensity has not updated to the archiving of R-spatial infrastructure packages, specifically rgeos, 2023-10-16 and notified here, (see https://r-spatial.github.io/evolution/<https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fr-spatial.github.io%2Fevolution%2F&data=05%7C01%7CRoger.Bivand%40nhh.no%7Cabfb15b780f74001c23e08dbd6493875%7C33a15b2f849941998d56f20b5aa91af2%7C0%7C0%7C638339382214033003%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=jeu%2F8mo1tCDwlT%2FbvgMnfV62xys6vW5mYT1ApSIsbxk%3D&reserved=0>) and directly to package maintainers in good time (June 2023). Please ensure that rgeos, rgdal, and maptools are removed from Bioconductor check servers for >= 3.18 as soon as possible. Unfortunately, flowDensity has strong reverse dependencies, leading to further problems upgrading to 3.18 on platforms without the archived packages on the library path. The maintainer email bounces, but mehrmalek at gmail.com may be an alternative. Roger -- Roger Bivand Emeritus Professor Norwegian School of Economics Postboks 3490 Ytre Sandviken, 5045 Bergen, Norway roger.biv...@nhh.no<mailto:roger.biv...@nhh.no> _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel<https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel&data=05%7C01%7CRoger.Bivand%40nhh.no%7Cabfb15b780f74001c23e08dbd6493875%7C33a15b2f849941998d56f20b5aa91af2%7C0%7C0%7C638339382214033003%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=5VXF2THPDUBi2rJz0W%2Bg%2BrfEyoD2VDuCEj9GkTNGcgA%3D&reserved=0> -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com<mailto:hpages.on.git...@gmail.com> _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
