I cloned the repo afresh set up the remote. seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git remote -v origin g...@github.com:veseshan/DNAcopy.git<mailto:g...@github.com:veseshan/DNAcopy.git> (fetch) origin g...@github.com:veseshan/DNAcopy.git<mailto:g...@github.com:veseshan/DNAcopy.git> (push) upstream g...@git.bioconductor.org:packages/DNAcopy.git<mailto:g...@git.bioconductor.org:packages/DNAcopy.git> (fetch) upstream g...@git.bioconductor.org:packages/DNAcopy.git<mailto:g...@git.bioconductor.org:packages/DNAcopy.git> (push)
I can run git diff and with upstream and it shows the differences as it should be seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git diff devel upstream/devel | head -12 diff --git a/DESCRIPTION b/DESCRIPTION index a0219f9..c7c59a3 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: DNAcopy -Title: DNA Copy Number Data Analysis -Version: 1.75.2 +Title: DNA copy number data analysis +Version: 1.75.1 Author: Venkatraman E. Seshan, Adam Olshen Description: Implements the circular binary segmentation (CBS) I have ensured Github has both my RSA and ED25519 keys and I can push to my repo and it uses SSH key appropriately. seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push Warning: Permanently added the ECDSA host key for IP address '140.82.112.3' to the list of known hosts. Enumerating objects: 5, done. Counting objects: 100% (5/5), done. Delta compression using up to 16 threads Compressing objects: 100% (3/3), done. Writing objects: 100% (3/3), 331 bytes | 331.00 KiB/s, done. Total 3 (delta 2), reused 0 (delta 0), pack-reused 0 remote: Resolving deltas: 100% (2/2), completed with 2 local objects. To github.com:veseshan/DNAcopy.git cdd8cfd..f953003 devel -> devel I confirmed that BiocCredentials has the SSH keys . However I am getting the same error when I try to push upstream seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push upstream devel FATAL: W any packages/DNAcopy venka...@mskcc.org<mailto:venka...@mskcc.org> DENIED by fallthru (or you mis-spelled the reponame) fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. I can’t figure out what the issue is. Thanks From: Kern, Lori <lori.sheph...@roswellpark.org> Sent: Wednesday, June 28, 2023 7:11 AM To: Seshan, Venkatraman <sesh...@mskcc.org>; bioc-devel@r-project.org Subject: [EXTERNAL] Re: DNAcopy git push issue I'm not sure why the upstream has a mailto: at the start but perhaps try resetting upstream to `git@ git. bioconductor. org: packages/DNAcopy. git` The credentials are set up correctly. Perhaps also adding a new ssh key to the BiocCredentials account I'm not sure why the upstream has a mailto: at the start but perhaps try resetting upstream to `g...@git.bioconductor.org:packages/DNAcopy.git<mailto:g...@git.bioconductor.org:packages/DNAcopy.git>` The credentials are set up correctly. Perhaps also adding a new ssh key to the BiocCredentials account might be necessary? Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Seshan, Venkatraman <sesh...@mskcc.org<mailto:sesh...@mskcc.org>> Sent: Tuesday, June 27, 2023 5:53 PM To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: [Bioc-devel] DNAcopy git push issue After a long time of not needing any change to the package I tried to push changes upstream and got the following error: seshanv@omega0:~/GitRepos/DNAcopy$ git push upstream devel FATAL: W any packages/DNAcopy mailto:venka...@mskcc.org DENIED by fallthru (or you mis-spelled the reponame) fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. --------------------------------------------------------- I haven't had the email address venka...@mskcc.org<mailto:venka...@mskcc.org> since 2007. The git remotes are correct seshanv@omega0:~/GitRepos/DNAcopy$ git remote -v origin https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git<https://urldefense.com/v3/__https:/secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https*3A*2F*2Fgithub.com*2Fveseshan*2FDNAcopy.git__;JSUlJSU!!KVWo1iE!WtJw2Cs3Yni_brf1ZBOdsfe-H5XkAQiCjR4jTEsSjxFKfg4o0_IiuxgaPrtmt8YAv1UCULg4gJKot1jFa6oAHb3XNhM$> (fetch) origin https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git<https://urldefense.com/v3/__https:/secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https*3A*2F*2Fgithub.com*2Fveseshan*2FDNAcopy.git__;JSUlJSU!!KVWo1iE!WtJw2Cs3Yni_brf1ZBOdsfe-H5XkAQiCjR4jTEsSjxFKfg4o0_IiuxgaPrtmt8YAv1UCULg4gJKot1jFa6oAHb3XNhM$> (push) upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git (fetch) upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git (push) --------------------------------------------------------- And Bioconductor Git Credentials app shows my correct email address sesh...@mskcc.org<mailto:sesh...@mskcc.org> I don't understand what the issue is. Any help in fixing this will be greatly appreciated. Thanks, Venkat Seshan ===================================================================== Please note that this e-mail and any files transmitted from Memorial Sloan Kettering Cancer Center may be privileged, confidential, and protected from disclosure under applicable law. If the reader of this message is not the intended recipient, or an employee or agent responsible for delivering this message to the intended recipient, you are hereby notified that any reading, dissemination, distribution, copying, or other use of this communication or any of its attachments is strictly prohibited. If you have received this communication in error, please notify the sender immediately by replying to this message and deleting this message, any attachments, and all copies and backups from your computer. 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