I saw an error message close to mine mentioned here https://github.com/Bioconductor/bioc_git_transition/issues/30 I cloned the package using ssh and so could not be the cause.
On Wed, Jun 28, 2023 at 3:53 PM Venkat Seshan <veses...@gmail.com> wrote: > I noticed that my prior message was mangled by outlook and so resending > from gmail. Thanks. > > I cloned the repo afresh and set up the remote. > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git remote -v > origin g...@github.com:veseshan/DNAcopy.git (fetch) > origin g...@github.com:veseshan/DNAcopy.git (push) > upstream g...@git.bioconductor.org:packages/DNAcopy.git (fetch) > upstream g...@git.bioconductor.org:packages/DNAcopy.git (push) > > I can run git diff and with upstream and it shows the differences as it > should be > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git diff devel upstream/devel | > head -12 > diff --git a/DESCRIPTION b/DESCRIPTION > index a0219f9..c7c59a3 100644 > --- a/DESCRIPTION > +++ b/DESCRIPTION > @@ -1,6 +1,6 @@ > Package: DNAcopy > -Title: DNA Copy Number Data Analysis > -Version: 1.75.2 > +Title: DNA copy number data analysis > +Version: 1.75.1 > Author: Venkatraman E. Seshan, Adam Olshen > Description: Implements the circular binary segmentation (CBS) > > I have ensured Github has both my RSA and ED25519 keys and I can push to > my repo and it uses SSH key appropriately. > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push > Warning: Permanently added the ECDSA host key for IP address > '140.82.112.3' to the list of known hosts. > Enumerating objects: 5, done. > Counting objects: 100% (5/5), done. > Delta compression using up to 16 threads > Compressing objects: 100% (3/3), done. > Writing objects: 100% (3/3), 331 bytes | 331.00 KiB/s, done. > Total 3 (delta 2), reused 0 (delta 0), pack-reused 0 > remote: Resolving deltas: 100% (2/2), completed with 2 local objects. > To github.com:veseshan/DNAcopy.git > cdd8cfd..f953003 devel -> devel > > I confirmed that BiocCredentials has the SSH keys . However I am getting > the same error when I try to push upstream > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push upstream devel > FATAL: W any packages/DNAcopy venka...@mskcc.org DENIED by fallthru > (or you mis-spelled the reponame) > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > > I can’t figure out what the issue is. > > Thanks > > On Wed, Jun 28, 2023 at 7:29 AM Kern, Lori <lori.sheph...@roswellpark.org> > wrote: > >> I'm not sure why the upstream has a mailto: at the start but perhaps >> try resetting upstream to `g...@git.bioconductor.org: >> packages/DNAcopy.git<mailto:g...@git.bioconductor.org >> :packages/DNAcopy.git>` >> >> The credentials are set up correctly. Perhaps also adding a new ssh key >> to the BiocCredentials account might be necessary? >> >> Cheers, >> >> >> >> Lori Shepherd - Kern >> >> Bioconductor Core Team >> >> Roswell Park Comprehensive Cancer Center >> >> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton Streets >> >> Buffalo, New York 14263 >> >> ________________________________ >> From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Seshan, >> Venkatraman <sesh...@mskcc.org> >> Sent: Tuesday, June 27, 2023 5:53 PM >> To: bioc-devel@r-project.org <bioc-devel@r-project.org> >> Subject: [Bioc-devel] DNAcopy git push issue >> >> After a long time of not needing any change to the package I tried to >> push changes upstream and got the following error: >> >> seshanv@omega0:~/GitRepos/DNAcopy$ git push upstream devel >> FATAL: W any packages/DNAcopy mailto:venka...@mskcc.org DENIED by >> fallthru >> (or you mis-spelled the reponame) >> fatal: Could not read from remote repository. >> >> Please make sure you have the correct access rights >> and the repository exists. >> --------------------------------------------------------- >> >> I haven't had the email address venka...@mskcc.org since 2007. The git >> remotes are correct >> >> seshanv@omega0:~/GitRepos/DNAcopy$ git remote -v >> origin >> https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git >> (fetch) >> origin >> https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git >> (push) >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git >> (fetch) >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git >> (push) >> --------------------------------------------------------- >> >> And Bioconductor Git Credentials app shows my correct email address >> sesh...@mskcc.org >> >> I don't understand what the issue is. Any help in fixing this will be >> greatly appreciated. >> >> Thanks, >> Venkat Seshan >> >> ===================================================================== >> >> Please note that this e-mail and any files transmitted from >> Memorial Sloan Kettering Cancer Center may be privileged, confidential, >> and protected from disclosure under applicable law. If the reader of >> this message is not the intended recipient, or an employee or agent >> responsible for delivering this message to the intended recipient, >> you are hereby notified that any reading, dissemination, distribution, >> copying, or other use of this communication or any of its attachments >> is strictly prohibited. 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