Hi Everyone, Thank you for your prompt response. Stephan should be able to access the package as soon as he adds SSH keys to the server. I will be sending Stephan a private email regarding his credentials to access the Bioconductor git credentials application.
Best, Nitesh > On Sep 3, 2020, at 10:47 PM, Manthan Shah <manthanshah27...@gmail.com> wrote: > > Hi Nitesh, > > I agree Stephan should have the developer rights required to make changes to > the package. Please let me know if there are any actions required from my > side. > > Best, > Manthan > > On Thu, Sep 3, 2020 at 9:10 PM Jesse Gillis <jesse.gil...@gmail.com > <mailto:jesse.gil...@gmail.com>> wrote: > Hi Nitesh, > > > > That is confirmed for both me and Manthan (who was a computational > > science developer in my lab). > > > > Cheers, > > > > Jesse > > > > On Thu, Sep 3, 2020 at 10:00 AM Stephan Fischer <stephisc...@gmail.com > <mailto:stephisc...@gmail.com>> wrote: > > > > > > Hi Jesse, Manthan, Nitesh, > > > > > > I wrote an e-mail earlier this week to Bioconductor support to take over > > maintenance of the MetaNeighbor package. Nitesh nicely offered to help me > > with the task, but would like to make sure that everyone agrees first. Can > > you please briefly confirm the change by answering this email? > > > > > > Thanks everyone, > > > > > > Best, > > > > > > Stephan > > > > > > On 03/09/2020 15:45, Nitesh Turaga wrote: > > > > > > Hi Stephan, > > > > > > First, I’d like you to cc Dr. Jesse Gillis and also Manthan so we know that > > everyone is in agreement. > > > > > > I can help you with the permissions on the Bioconductor repo. Before you > > get permissions you will only be able to fetch using the HTTP protocol, i.e > > > > > > git remote set-url upstream > > https://git.bioconductor.org/packages/MetaNeighbor > > <https://git.bioconductor.org/packages/MetaNeighbor> > > > > > > git fetch —all > > > > > > Once you get the permissions you can modify the remote to use the SSH > > protocol instead. > > > > > > Best, > > > > > > Nitesh > > > > > > On Aug 31, 2020, at 3:49 AM, Stephan Fischer <stephisc...@gmail.com > > <mailto:stephisc...@gmail.com>> wrote: > > > > > > Hi, > > > > > > My name is Stephan Fischer, I'm a postdoc at CSHL with Dr Jesse Gillis > > > and I'm currently maintaining the internal version of the MetaNeighbor > > > package. The Bioconductor version of the package was previously > > > maintained by Manthan Shah, who left the lab about a year ago. I would > > > like to take over the maintenance of the MetaNeighbor package on > > > Bioconductor and sync it with our internal version. Here is what I would > > > like to do: > > > > > > * Change of Github repository: Manthan hosted his own version of > > > MetaNeighbor on a personal Github to sync with Bioconductor. I would > > > rather use the Gillis lab Github instead. If I understand correctly, > > > this should not be too much of an issue, since the two repositories > > > have a shared history (Manthan forked the Gillis lab repo). > > > * Change of permission: I set the bioconductor URL upstream of the > > > Gillis lab repo, but when I try to fetch, I get a warning that I > > > don't have the right permissions. At a glance I could not find how > > > the permission system works. Would it be possible to update > > > permissions so that I (and maybe other lab members) can access the > > > Bioconductor repo? > > > > > > Thanks for your help! > > > > > > Best, > > > > > > Stephan > > > > > > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > > Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > <https://stat.ethz.ch/mailman/listinfo/bioc-devel> > > > > > > > > -- > Regards, > Manthan Shah [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
