So the release version was updated now. I guess it is affected with a bit of delay. Cheers! --
Ali Oghabian Bioinformatics, RNA-splicing laboratory (Room 4024B), Institute of Biotechnology, P.O.Box 56 (Viikinkaari 5), 00014 University of Helsinki Finland. Email: ali.oghab...@helsinki.fi Phone: +358 50 4484569 ________________________________ From: Oghabian, Ali Sent: 08 February 2018 22:35:37 To: Martin Morgan; Turaga, Nitesh; bioc-devel Subject: Re: [Bioc-devel] Updates not affected Thank you for the information. No actually I`m downloading the Bioc-devel now however I assume this is related to the devel version of the packages? How about the Release version? My git commits have not been affected in the release version either. Cheers, Ali -- Ali Oghabian Bioinformatics, RNA-splicing laboratory (Room 4024B), Institute of Biotechnology, P.O.Box 56 (Viikinkaari 5), 00014 University of Helsinki Finland. Email: ali.oghab...@helsinki.fi Phone: +358 50 4484569 ________________________________ From: Martin Morgan <martin.mor...@roswellpark.org> Sent: 08 February 2018 20:38:04 To: Oghabian, Ali; Turaga, Nitesh; bioc-devel Subject: Re: [Bioc-devel] Updates not affected remember that Bioconductor has _nightly_ builds, so commits today won't be reflected until tomorrow's build. See http://bioconductor.org/checkResults/ http://bioconductor.org/checkResults/3.7/bioc-LATEST/ http://bioconductor.org/checkResults/3.7/bioc-LATEST/IntEREst/malbec2-buildsrc.html Note the information in the left top of the above, Snapshot Date ad Last Commit for information on when the last completed builds started. Looks like this commit commit c28e2aafa6311d1eaebbf96d87b241574558f35f Author: Ali Oghabian <oghab...@introni.biocenter.helsinki.fi> Date: Wed Feb 7 12:09:13 2018 +0200 Add psi() function + improve annotateU12() and referencePrepare() + Remove eBayesInterest + Improve vignette did not build without error, and this commit commit 555f3fc33ac167e95ea7cf36fb5e8259d803c39f Author: Ali Oghabian <oghab...@introni.biocenter.helsinki.fi> Date: Thu Feb 8 12:23:04 2018 +0200 Improve vignette and correct DESCRITPTION has not yet built. Did you build and check your package (with R-devel and current Bioc-devel packages) before pushing your commits? Martin Morgan On 02/08/2018 01:31 PM, Oghabian, Ali wrote: > Hi again! > > Ok, from now on I'll send to the email list. > > > git remote -v > origin https://github.com/gacatag/IntEREst.git (fetch) > origin https://github.com/gacatag/IntEREst.git (push) > upstream g...@git.bioconductor.org:packages/IntEREst (fetch) > upstream g...@git.bioconductor.org:packages/IntEREst (push) > > > I made extensive changes to both devel and release. > > As an example I increased the z in the (x.y.z) version: > > > The release version should be at 1.2.2 (not 1.2.0 !) > (https://bioconductor.org/packages/release/bioc/html/IntEREst.html) > > The devel version should be at 1.3.2 (not 1.3.0 !) > > (https://www.bioconductor.org/packages/3.7/bioc/html/IntEREst.html<https://www.bioconductor.org/packages/3.7/bioc/html/IntEREst.html>) > > > Cheers, > > > Ali > > > -- > > Ali Oghabian > Bioinformatics, > > RNA-splicing laboratory (Room 4024B), > > Institute of Biotechnology, > P.O.Box 56 (Viikinkaari 5), > 00014 University of Helsinki > Finland. > > Email: > ali.oghab...@helsinki.fi<https://webmail.helsinki.fi/horde/imp/dynamic.php?page=mailbox#> > Phone: +358 50 4484569 > > ________________________________ > From: Turaga, Nitesh <nitesh.tur...@roswellpark.org> > Sent: 08 February 2018 20:11:38 > To: Oghabian, Ali; bioc-devel > Subject: Re: Updates not affected > > Hi Ali, > > Please send all these queries to the bioc-devel mailing list. There are other > people on the team/developer community who can help you with these questions > in the event there is no response from us. > > I need more information to check the your package, > > git remote -v (so that I can see that your git repo is set up > correctly) > > What commits are the ones you are expecting to see in the bioconductor git > repo? > > We have started an RSS feed which is updated every 20 mins, > https://stat.ethz.ch/pipermail/bioc-devel/2018-January/012577.html. Please > follow that if you want to see if your changes are in effect. > > Best, > > Nitesh > > >> On Feb 8, 2018, at 12:58 PM, Oghabian, Ali <ali.oghab...@helsinki.fi> wrote: >> >> Dear Nitesh Hello. >> >> Few hours ago I pushed several commits to the develop and release version of >> our package IntEREst. It has not yet been affected though and the updates >> are not shown in Bioconductor website. Could you kindly check the situation >> of the updates? >> >> To update release version I ran: >> git push origin RELEASE_3_6 >> and >> git push upstream RELEASE_3_6 >> >> To update develop version I ran: >> git push origin >> and >> git push upstream >> >> The changes have already been affected in github. >> >> cheers, >> >> Ali >> >> -- >> >> Ali Oghabian >> Bioinformatics, >> >> RNA-splicing laboratory (Room 4024B), >> Institute of Biotechnology, >> P.O.Box 56 (Viikinkaari 5), >> 00014 University of Helsinki >> Finland. >> >> Email: ali.oghab...@helsinki.fi >> Phone: +358 50 4484569 > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. 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