remember that Bioconductor has _nightly_ builds, so commits today won't
be reflected until tomorrow's build. See
http://bioconductor.org/checkResults/
http://bioconductor.org/checkResults/3.7/bioc-LATEST/
http://bioconductor.org/checkResults/3.7/bioc-LATEST/IntEREst/malbec2-buildsrc.html
Note the information in the left top of the above, Snapshot Date ad Last
Commit for information on when the last completed builds started.
Looks like this commit
commit c28e2aafa6311d1eaebbf96d87b241574558f35f
Author: Ali Oghabian <oghab...@introni.biocenter.helsinki.fi>
Date: Wed Feb 7 12:09:13 2018 +0200
Add psi() function + improve annotateU12() and referencePrepare() +
Remove eBayesInterest + Improve vignette
did not build without error, and this commit
commit 555f3fc33ac167e95ea7cf36fb5e8259d803c39f
Author: Ali Oghabian <oghab...@introni.biocenter.helsinki.fi>
Date: Thu Feb 8 12:23:04 2018 +0200
Improve vignette and correct DESCRITPTION
has not yet built.
Did you build and check your package (with R-devel and current
Bioc-devel packages) before pushing your commits?
Martin Morgan
On 02/08/2018 01:31 PM, Oghabian, Ali wrote:
Hi again!
Ok, from now on I'll send to the email list.
git remote -v
origin https://github.com/gacatag/IntEREst.git (fetch)
origin https://github.com/gacatag/IntEREst.git (push)
upstream g...@git.bioconductor.org:packages/IntEREst (fetch)
upstream g...@git.bioconductor.org:packages/IntEREst (push)
I made extensive changes to both devel and release.
As an example I increased the z in the (x.y.z) version:
The release version should be at 1.2.2 (not 1.2.0 !)
(https://bioconductor.org/packages/release/bioc/html/IntEREst.html)
The devel version should be at 1.3.2 (not 1.3.0 !)
(https://www.bioconductor.org/packages/3.7/bioc/html/IntEREst.html<https://www.bioconductor.org/packages/3.7/bioc/html/IntEREst.html>)
Cheers,
Ali
--
Ali Oghabian
Bioinformatics,
RNA-splicing laboratory (Room 4024B),
Institute of Biotechnology,
P.O.Box 56 (Viikinkaari 5),
00014 University of Helsinki
Finland.
Email:
ali.oghab...@helsinki.fi<https://webmail.helsinki.fi/horde/imp/dynamic.php?page=mailbox#>
Phone: +358 50 4484569
________________________________
From: Turaga, Nitesh <nitesh.tur...@roswellpark.org>
Sent: 08 February 2018 20:11:38
To: Oghabian, Ali; bioc-devel
Subject: Re: Updates not affected
Hi Ali,
Please send all these queries to the bioc-devel mailing list. There are other
people on the team/developer community who can help you with these questions in
the event there is no response from us.
I need more information to check the your package,
git remote -v (so that I can see that your git repo is set up
correctly)
What commits are the ones you are expecting to see in the bioconductor git repo?
We have started an RSS feed which is updated every 20 mins,
https://stat.ethz.ch/pipermail/bioc-devel/2018-January/012577.html. Please
follow that if you want to see if your changes are in effect.
Best,
Nitesh
On Feb 8, 2018, at 12:58 PM, Oghabian, Ali <ali.oghab...@helsinki.fi> wrote:
Dear Nitesh Hello.
Few hours ago I pushed several commits to the develop and release version of
our package IntEREst. It has not yet been affected though and the updates are
not shown in Bioconductor website. Could you kindly check the situation of the
updates?
To update release version I ran:
git push origin RELEASE_3_6
and
git push upstream RELEASE_3_6
To update develop version I ran:
git push origin
and
git push upstream
The changes have already been affected in github.
cheers,
Ali
--
Ali Oghabian
Bioinformatics,
RNA-splicing laboratory (Room 4024B),
Institute of Biotechnology,
P.O.Box 56 (Viikinkaari 5),
00014 University of Helsinki
Finland.
Email: ali.oghab...@helsinki.fi
Phone: +358 50 4484569
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