Hi,
The download report is actually about to change. See:
https://bioconductor.org/packages/new-stats/bioc/Biobase/
for how the new stats are going to look. This is work in progress (ETA
is next week) but an important change is that you'll be able to get the
numbers from tabulated files (e.g. the Biobase_<year>_stats files in the
case of Biobase) so parsing HTML won't be necessary.
Cheers,
H.
On 05/05/2016 11:51 AM, Lori Shepherd wrote:
Hi Marcin,
Here is a link to how Bioconductor creates it's badges:
https://github.com/Bioconductor/bioconductor.org/blob/master/Rakefile#L648
If you would like to create a badge for raw counts the following might
be of use to you. Please also see help on XML Path Language:
https://www.w3.org/TR/xpath/#path-abbrev
library(xml2)
url = "http://bioconductor.org/packages/stats/bioc/RTCGA.html";
doc = read_html(url)
rtcga = xml_find_all(doc, "//table[@class='stats']/tr/td[2]/text()")
%>% as.character %>% as.integer
url2 = "http://bioconductor.org/packages/stats/index.html";
doc2 = read_html(url2)
all = xml_find_all(doc2, "//table[@class='stats']/tr/td[2]/text()")
%>% as.character %>% as.integer
On Wed, May 4, 2016 at 3:43 PM, Marcin Kosiński <m.p.kosin...@gmail.com> wrote:
Hi Robert,
Thanks for reply.
What if I am interested in both showing raw counts and percentiles?
If this is not created and no one is willing to create sush shields, then I
can volounteer for that.
It'll be great to have some examples on how the percentile badges were
created.
Best,
Marcin
2016-05-04 17:22 GMT+02:00 Dan Tenenbaum <dtene...@fredhutch.org>:
That's correct.
Dan
----- Original Message -----
From: "Andrzej Oleś" <andrzej.o...@gmail.com>
To: "Robert M. Flight" <rfligh...@gmail.com>
Cc: "Marcin Kosiński" <m.p.kosin...@gmail.com>, "bioc-devel" <
bioc-devel@r-project.org>, "Dan Tenenbaum"
<dtene...@fredhutch.org>
Sent: Wednesday, May 4, 2016 8:15:36 AM
Subject: Re: [Bioc-devel] downloads number status shields for packages
Hi Marcin, Robert,
I think one problem with raw counts is that these reflect only downloads
from BioC servers and not from the mirrors - is that correct @Dan?
Cheers,
Andrzej
On Wed, May 4, 2016 at 5:11 PM, Robert M. Flight <rfligh...@gmail.com>
wrote:
Those numbers are used to calculate the percentile download stat that is
already on a given bioconductor package landing page. See
http://bioconductor.org/packages/release/bioc/html/RTCGA.html
I believe this was the way the Bioc admins went instead of just raw
downloads.
-Robert
On Wed, May 4, 2016 at 10:58 AM Marcin Kosiński <m.p.kosin...@gmail.com
wrote:
Hi all,
Have anyone considered creating shields (http://shields.io/) with the
status of total downloads number for packages held on bioc? This
already
works for CRAN packages http://cranlogs.r-pkg.org/
It could take total `Nb of downloads` from the right table like here
http://bioconductor.org/packages/stats/bioc/RTCGA.html
Best,
Marcin
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Program in Computational Biology
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