What exactly do you mean by numbering. As far as I understand, numbering is already there in devel:
https://bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html Kasper On Wed, Jul 29, 2015 at 10:39 PM, Thomas Girke <thomas.gi...@ucr.edu> wrote: > Perfect, if your update in Bioc-devel eliminates the awkward bullets in > front of the numbers. The lack of numbered content tables in Bioc-release > may be something we have to live with until the next Bioc release? I don't > want to overstretch Dan's or the Bioc team's patience with overly picky > style requests. > Thomas > > On Wed, Jul 29, 2015 at 6:49 PM Kasper Daniel Hansen < > kasperdanielhan...@gmail.com> wrote: > >> When I roll that styles.css into the bioconductor.css file shipping >> with BiocStyle, it gets rid of the bullets. >> >> Its added to BiocStyle 1.7.5 >> >> Kasper >> On Wed, Jul 29, 2015 at 9:37 PM, Kasper Daniel Hansen < >> kasperdanielhan...@gmail.com> wrote: >> >>> This is just reporting what I see using Bioc-devel: >>> >>> I get a TOC where each line looks like >>> >>> <BULLET> <SECTION_NUMBER_AS_LINK> <SECTION_TITLE_AS_LINK> >>> >>> While I agree that the bullet is kind of ugly (and would be great to >>> get rid of), I do get the section numbering functionality you want. >>> >>> Note: for this report I am rendering the Rmd file myself, I haven't >>> tested how it looks when I do it as a vignette. >>> >>> It would be great to expand on the BiocStyle vignette and discuss >>> citations and other issues and also include a clear template file. I am >>> planning on doing some pull request along those lines soon; I have been >>> testing Rmd -> HTML extensively for a course I am developing, but I am also >>> new to the knitr+markdown thing so I am still experimenting. >>> >>> Kasper >>> >>> >> On Wed, Jul 29, 2015 at 4:44 PM, Thomas Girke <thomas.gi...@ucr.edu> >>> wrote: >>> >> A simple formatting issue: >>>> >>>> Since support for table of contents in R markdown vignettes has become >>>> available, it seems like an amazing solution for many online >>>> documentation needs in the future. >>>> >>>> What would help me to fully to adopt to it, is a solution to get rid of >>>> the bullets in a numbered table of content which looks a bit unusual to >>>> me: >>>> >>>> http://www.bioconductor.org/packages/release/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html >>>> For navigating longer documents numbered tables of contents are an >>>> essential feature to me, which I believe wasn't available in earlier R >>>> markdown versions or sometimes they showed up in unacceptable places >>>> like before the title of a document. >>>> >>>> A prescribed solution to get rid of these bullets from here >>>> >>>> http://stackoverflow.com/questions/28138456/rmarkdown-with-knitr-to-html-how-to-hide-bullets-in-toc-table-of-contents >>>> didn't work for me. >>>> >>>> Also, it would be nice to be able to generate the exact same vignette >>>> style in Bioc release and development, but it seems others have >>>> difficulties with this too, probably due to version differences of R >>>> markdown as seen here: >>>> >>>> http://www.bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html >>> >>> >>>> >>>> Thanks for making BiocStyle and R markdown available. I really enjoy >>>> using them. The resulting HTML pages look professionally designed and >>>> are highly functional while allowing us to focus on generating content >>>> in a consistent format rather than getting lost in formatting issues. >>>> >>>> Thomas >>>> >>>> _______________________________________________ >>>> >>> Bioc-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> >>> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
