This is just reporting what I see using Bioc-devel: I get a TOC where each line looks like
<BULLET> <SECTION_NUMBER_AS_LINK> <SECTION_TITLE_AS_LINK> While I agree that the bullet is kind of ugly (and would be great to get rid of), I do get the section numbering functionality you want. Note: for this report I am rendering the Rmd file myself, I haven't tested how it looks when I do it as a vignette. It would be great to expand on the BiocStyle vignette and discuss citations and other issues and also include a clear template file. I am planning on doing some pull request along those lines soon; I have been testing Rmd -> HTML extensively for a course I am developing, but I am also new to the knitr+markdown thing so I am still experimenting. Kasper On Wed, Jul 29, 2015 at 4:44 PM, Thomas Girke <thomas.gi...@ucr.edu> wrote: > A simple formatting issue: > > Since support for table of contents in R markdown vignettes has become > available, it seems like an amazing solution for many online > documentation needs in the future. > > What would help me to fully to adopt to it, is a solution to get rid of > the bullets in a numbered table of content which looks a bit unusual to > me: > > http://www.bioconductor.org/packages/release/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html > For navigating longer documents numbered tables of contents are an > essential feature to me, which I believe wasn't available in earlier R > markdown versions or sometimes they showed up in unacceptable places > like before the title of a document. > > A prescribed solution to get rid of these bullets from here > > http://stackoverflow.com/questions/28138456/rmarkdown-with-knitr-to-html-how-to-hide-bullets-in-toc-table-of-contents > didn't work for me. > > Also, it would be nice to be able to generate the exact same vignette > style in Bioc release and development, but it seems others have > difficulties with this too, probably due to version differences of R > markdown as seen here: > > http://www.bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html > > Thanks for making BiocStyle and R markdown available. I really enjoy > using them. The resulting HTML pages look professionally designed and > are highly functional while allowing us to focus on generating content > in a consistent format rather than getting lost in formatting issues. > > Thomas > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
