Perfect, if your update in Bioc-devel eliminates the awkward bullets in front of the numbers. The lack of numbered content tables in Bioc-release may be something we have to live with until the next Bioc release? I don't want to overstretch Dan's or the Bioc team's patience with overly picky style requests. Thomas
On Wed, Jul 29, 2015 at 6:49 PM Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > When I roll that styles.css into the bioconductor.css file shipping with > BiocStyle, it gets rid of the bullets. > > Its added to BiocStyle 1.7.5 > > Kasper > On Wed, Jul 29, 2015 at 9:37 PM, Kasper Daniel Hansen < > kasperdanielhan...@gmail.com> wrote: > >> This is just reporting what I see using Bioc-devel: >> >> I get a TOC where each line looks like >> >> <BULLET> <SECTION_NUMBER_AS_LINK> <SECTION_TITLE_AS_LINK> >> >> While I agree that the bullet is kind of ugly (and would be great to >> get rid of), I do get the section numbering functionality you want. >> >> Note: for this report I am rendering the Rmd file myself, I haven't >> tested how it looks when I do it as a vignette. >> >> It would be great to expand on the BiocStyle vignette and discuss >> citations and other issues and also include a clear template file. I am >> planning on doing some pull request along those lines soon; I have been >> testing Rmd -> HTML extensively for a course I am developing, but I am also >> new to the knitr+markdown thing so I am still experimenting. >> >> Kasper >> >> > On Wed, Jul 29, 2015 at 4:44 PM, Thomas Girke <thomas.gi...@ucr.edu> >> wrote: >> > A simple formatting issue: >>> >>> Since support for table of contents in R markdown vignettes has become >>> available, it seems like an amazing solution for many online >>> documentation needs in the future. >>> >>> What would help me to fully to adopt to it, is a solution to get rid of >>> the bullets in a numbered table of content which looks a bit unusual to >>> me: >>> >>> http://www.bioconductor.org/packages/release/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html >>> For navigating longer documents numbered tables of contents are an >>> essential feature to me, which I believe wasn't available in earlier R >>> markdown versions or sometimes they showed up in unacceptable places >>> like before the title of a document. >>> >>> A prescribed solution to get rid of these bullets from here >>> >>> http://stackoverflow.com/questions/28138456/rmarkdown-with-knitr-to-html-how-to-hide-bullets-in-toc-table-of-contents >>> didn't work for me. >>> >>> Also, it would be nice to be able to generate the exact same vignette >>> style in Bioc release and development, but it seems others have >>> difficulties with this too, probably due to version differences of R >>> markdown as seen here: >>> >>> http://www.bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html >> >> >>> >>> Thanks for making BiocStyle and R markdown available. I really enjoy >>> using them. The resulting HTML pages look professionally designed and >>> are highly functional while allowing us to focus on generating content >>> in a consistent format rather than getting lost in formatting issues. >>> >>> Thomas >>> >>> _______________________________________________ >>> >> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
