Hello, Indeed there seems to be a global schema change regarding external_gene_id to the latest versions of most Ensembl supported organisms which affected also my package metaseqR. One solution is to change the host in the useMart function (assuming the use of biomaRt to query Ensembl) to point to older Ensembl archives.
Panagiotis Στις 17 Οκτ 2014 4:52 μ.μ., ο χρήστης "Martin, Tiphaine" < tiphaine.mar...@kcl.ac.uk> έγραψε: > Hi Everybody, > > > Yesterday, I observed that ENSEMBL changed a little their schema of the > dataset "hsapiens_gene_ensembl". > > In my case, some of my functions were impacted by the change from > "external_gene_id" to > > "external_gene_name". > > > Maybe there are other change in this dataset or other datasets. > > > Regards, > > Tiphaine > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
