Well spotted Tiphaine ! I just checked and this has affected my package (GOexpress) as well, as it fetches the external_gene_id to annotate gene features. This prevent the key analysis step from completing on my analysis of *Bos taurus* gene expression as well.
Consequently, I will bug-fix the release version immediately. For the record, I make a few different calls to biomaRt for gene ontology annotations, and I didn't get any error message there. But as you say, there may be other Easter eggs in the various datasets. Thanks very much ! Kevin On 17 October 2014 14:48, Martin, Tiphaine <tiphaine.mar...@kcl.ac.uk> wrote: > Hi Everybody, > > > Yesterday, I observed that ENSEMBL changed a little their schema of the > dataset "hsapiens_gene_ensembl". > > In my case, some of my functions were impacted by the change from > "external_gene_id" to > > "external_gene_name". > > > Maybe there are other change in this dataset or other datasets. > > > Regards, > > Tiphaine > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Kévin RUE-ALBRECHT Wellcome Trust Computational Infection Biology PhD Programme University College Dublin Ireland http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
