Hi, When I try to start epivizr with a defined region of interest, the region is always mapped to the default chromosome 11.
library(epivizr) mz = startEpiviz(chr = "chr2", start = 1e5, end = 2e5) yields the URL http://epiviz.cbcb.umd.edu/index.php?websocket-host[]=ws://localhost:7312&debug=false&chr=chr2&start=100000&end=200000&settings=default&ws=Y8kWxCO2Ajn&seqName=chr11&; and a view that is centered around chr11:100000-200000. It seems that the defaults overwrite the chromosome location, both in the latest version of 'epivizr' of bioc-release and bioc-devel. Am I missing an important option to overwrite the default properly? Best wishes Julian [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
