Hi Hector,
Looks all fine now, thanks for the fast fix!
Best wishes
Julian
On 04.06.2014 12:37, Hector Corrada Bravo wrote:
Hi Julian,
There was a bug after an update on the epiviz web app. A fix is now
available on both devel and release github repos:
https://github.com/epiviz/epivizr [2]
https://github.com/epiviz/epivizr-release [3]
Also available on svn and will be available on next build.
Thanks!
Hector
PS. Let me know how things go!
On Wed, Jun 4, 2014 at 2:41 PM, Julian Gehring
<julian.gehr...@embl.de> wrote:
Hi,
When I try to start epivizr with a defined region of interest, the
region is always mapped to the default chromosome 11.
library(epivizr)
mz = startEpiviz(chr = "chr2", start = 1e5, end = 2e5)
yields the URL
http://epiviz.cbcb.umd.edu/index.php?websocket-host[]=ws://localhost:7312&debug=false&chr=chr2&start=100000&end=200000&settings=default&ws=Y8kWxCO2Ajn&seqName=chr11&;
[1]
and a view that is centered around chr11:100000-200000. It seems
that the defaults overwrite the chromosome location, both in the
latest version of 'epivizr' of bioc-release and bioc-devel. Am I
missing an important option to overwrite the default properly?
Best wishes
Julian
Links:
------
[1]
http://epiviz.cbcb.umd.edu/index.php?websocket-host[]=ws://localhost:7312&debug=false&chr=chr2&start=100000&end=200000&settings=default&ws=Y8kWxCO2Ajn&seqName=chr11&
[2] https://github.com/epiviz/epivizr
[3] https://github.com/epiviz/epivizr-release
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