Hi Dan, I can see the issue is resolved now! I will update my version of R-devel, too.
Thanks, Norman On Fri, Feb 8, 2013 at 1:19 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > On Thu, Feb 7, 2013 at 8:48 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: >> Hi Norman, >> >> >> On Thu, Feb 7, 2013 at 6:59 PM, Norman Pavelka <normanpave...@gmail.com> >> wrote: >>> Hi, >>> >>> I am sure many of you may have noticed already, but basically every >>> package in Bioc-devel that has a vignette (i.e. almost every package) >>> is currently issuing warnings in R CMD check: >>> http://www.bioconductor.org/checkResults/2.12/bioc-LATEST/ >>> >>> I ran some tests myself and it appears that in the latest version of >>> R-devel some changes have been introduced in R CMD build that causes >>> it not to copy the compiled PDF vignettes to inst\doc. R CMD build >>> returns only a silent warning such as: >>> >>> * creating vignettes ... OK >>> Warning in file.copy(c(vigns$docs, outfiles), doc_dir) : >>> problem copying >>> E:\biocbld\bbs-2.12-bioc\tmpdir\Rtmpq4jjoR\Rbuild93c202b5ca6\plgem\vignettes\plgem.pdf >>> to inst\doc\plgem.pdf: No such file or directory >>> >>> R CMD check then issues the following user-visible warning: >>> >>> * checking package vignettes in 'inst/doc' ... WARNING >>> Package vignette without corresponding PDF: >>> 'plgem.Rnw' >>> >>> Compiling my package from the same source but using the previous >>> version of R CMD build does not cause any problems, i.e. the vignette >>> PDF is correctly copied to inst/doc and R CMD check does not issue any >>> warning. >>> >>> Should we bring this up to R-Devel mailing list? >> >> >> I'm not sure (checking right now) but I think this was fixed in r61843. >> The build machines are running r61836. The nightly build is underway >> but I will update R-devel tomorrow if doing so indeed fixes the >> problem. >> > > I can confirm that pdfs are properly copied into source tarballs with > R-devel r61868. > > I will update to the latest R-devel tomorrow. > Dan > > >> Thanks! >> Dan >> >>> >>> Cheers, >>> Norman >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
