These are all good reasons to switch back to letting ZFS handle it. I did put 
about 600GB of data on the pool as configured with Raid 6 on the card, verified 
the data, and scrubbed it a couple time in the process and there's no problems, 
so it appears that the firmware upgrade fixed my problems. However, I'm going 
to switch it back to passthrough disks, remake the pool and try it again.
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