So, it sounds like you're trying to create an installer, but have recent
builds of your product incorporated in automatically? A sort of
constant-integration installer? 

I think you may be on the right track by using Heat. It's a good tool for
generating a WiX source file for you. You probably already know its general
use, but if not: You give it the path to a directory and it will look at all
of the files in that directory and create a .wxs file that defines the
components you'd need to include those files in your installer. This
auto-generated .wxs file is has a Fragment element as its root. You can
include Fragments in your main .wxs file (the one you got when you created a
WiX project) by including a reference to one of the components (via a
ComponentRef) or many components grouped together (ComponentGroupRef). 

The main .wxs file will tie all of your external fragments together. So, you
could create a .wxs file with Heat and include it in your project. When Heat
runs again, that .wxs file will of course change. But as long as the
ComponentGroups stay the same, it shouldn't matter.

Sorry, this is a lot of  info and maybe a little confusing if you're just
starting out. It might help to start simpler and learn the basics first.
There are some excellent resources available.

-----
Learn WiX with the book: 
https://www.packtpub.com/wix-a-developers-guide-to-windows-installer-xml/book
WiX: A Developer's Guide to Windows Installer XML 
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