Am Dienstag, den 11.05.2010, 17:36 +0200 schrieb Silvio Tschapke:
> Hi all,
> 
> how do I configure tomcat that it finds the biopython libaries?
> Biopython is not included in jython.jar (which I have moved into the
> tomcat/lib folder.
> Biopython installs itself into the python26/lib/side-packages folder.
If my google-research is correct, you will have to use a branch of
bioperl which supports jython: http://github.com/kellrott/biopython

If you use this and jython 2.5.1, you will have to set the environment
variable JYTHONPATH=$PATH_WHERE_YOU_CHECKEDOUT_BIOPYTHON

After that you should be able to run jython in command line and do an
>>> import Bio.Entrez
without problems. When you have run that command successfully you could
go further to try and embed jython with that environment variable into a
servlet.

Bye
 Felix

Thanks to Chris for providing the link to the jython tutorial :)
> 
> But how can I tell tomcat about this? There is no python.jar neither a
> biopython.jar file which I could drop into tomcat/lib.
> 
> While running my Java Servlet which accesses a Jython module, that should
> access a Biopython class, this class cannot be found.
> 
> Thanks for your reply!



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