In that case, you need to
configure --with-cuda=/usr/local/cuda-8.0
Cheers,
Gilles
On 4/3/2018 4:12 PM, abhisek Mondal wrote:
I have cuda installed in /usr/local/cuda-8.0.
On Tue, Apr 3, 2018 at 12:37 PM, Gilles Gouaillardet
<gil...@rist.or.jp <mailto:gil...@rist.or.jp>> wrote:
Did you install CUDA and where ?
On 4/3/2018 3:51 PM, abhisek Mondal wrote:
Thanks a lot. Installing the headers worked like a charm !
I have a question though. Why does configuration says:
Version: 3.0.1
Build MPI C bindings: yes
Build MPI C++ bindings (deprecated): no
Build MPI Fortran bindings: mpif.h, use mpi
MPI Build Java bindings (experimental): no
Build Open SHMEM support: yes
Debug build: no
Platform file: (none)
Miscellaneous
-----------------------
*CUDA support: no*
*
*
*
*
I have a single GPU on my machine. Do I need to define it
manually while configuring openmpi?
On Tue, Apr 3, 2018 at 11:21 AM, Gilles Gouaillardet
<gil...@rist.or.jp <mailto:gil...@rist.or.jp>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>>> wrote:
It looks like kernel-headers is required too
Cheers,
Gilles
On 4/3/2018 2:28 PM, abhisek Mondal wrote:
Hello,
Installing glibc moved the installation little bit but
again
stuck at sanity check.
Location of config.log:
https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU>
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU>>
$ cpp --version
cpp (GCC) 4.8.5 20150623 (Red Hat 4.8.5-16)
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying
conditions.
There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.
I have gcc and gcc-c++ installed.
On Tue, Apr 3, 2018 at 10:08 AM, Gilles Gouaillardet
<gil...@rist.or.jp <mailto:gil...@rist.or.jp>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>>>> wrote:
This is the relevant part related to this error
configure:6620: checking whether we are cross
compiling
configure:6628: gcc -o conftest conftest.c >&5
conftest.c:10:19: fatal error: stdio.h: No such
file or
directory
#include <stdio.h>
^
compilation terminated.
configure:6632: $? = 1
configure:6639: ./conftest
../configure: line 6641: ./conftest: No such file
or directory
configure:6643: $? = 127
at the very least, you need to install the
glibc-headers
package
Cheers,
Gilles
On 4/3/2018 1:22 PM, abhisek Mondal wrote:
Hello,
I have uploaded the config.log here:
https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU>
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU>>
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU>
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU
<https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU>>>
On Tue, Apr 3, 2018 at 9:47 AM, Gilles
Gouaillardet
<gil...@rist.or.jp <mailto:gil...@rist.or.jp>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>>>
<mailto:gil...@rist.or.jp
<mailto:gil...@rist.or.jp> <mailto:gil...@rist.or.jp
<mailto:gil...@rist.or.jp>>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>
<mailto:gil...@rist.or.jp <mailto:gil...@rist.or.jp>>>>> wrote:
Can you please compress and attach your
config.log ?
You might also want to double check you can
compile *and*
run a
simple C hello world program
Cheers,
Gilles
On 4/3/2018 1:06 PM, abhisek Mondal wrote:
Hi,
I need some help regarding compiling
Openmpi-3.0. I have
perfectly working C compiler, however,
during
configuration
I'm keep getting this error:
/============================================================================/
/== Configuring Open MPI/
/============================================================================/
/
/
/*** Startup tests/
/checking build system type...
x86_64-unknown-linux-gnu/
/checking host system type...
x86_64-unknown-linux-gnu/
/checking target system type...
x86_64-unknown-linux-gnu/
/checking for gcc... gcc/
/checking whether the C compiler
works... yes/
/checking for C compiler default
output file
name...
a.out/
/checking for suffix of executables... /
/*checking whether we are cross
compiling...
configure: error:
in `/home/user/openmpi-2.0.4':*/
/configure: error: cannot run C compiled
programs./
/If you meant to cross compile, use
`--host'./
/See `config.log' for more details/
I do not know waht is cross compiling
but how
can I
avoid this
error ?
Please help me out here.
Thanks
-- Abhisek Mondal
/Senior Research Fellow
/
/Structural Biology and Bioinformatics
Division
/
/CSIR-Indian Institute of Chemical
Biology/
/Kolkata 700032
/
/INDIA
/
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-- Abhisek Mondal
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/
/Structural Biology and Bioinformatics Division
/
/CSIR-Indian Institute of Chemical Biology/
/Kolkata 700032
/
/INDIA
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/Senior Research Fellow
/
/Structural Biology and Bioinformatics Division
/
/CSIR-Indian Institute of Chemical Biology/
/Kolkata 700032
/
/INDIA
/
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/Senior Research Fellow
/
/Structural Biology and Bioinformatics Division
/
/CSIR-Indian Institute of Chemical Biology/
/Kolkata 700032
/
/INDIA
/
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