Hi Vahid, This may be a red herring, but are you using a redirect or -i for the QE input? If you are running "pw.x < input" try running with "pw.x -i input".
John -----Original Message----- From: users [mailto:users-boun...@lists.open-mpi.org] On Behalf Of Vahid Askarpour Sent: Friday, January 19, 2018 8:15 AM To: Open MPI Users <users@lists.open-mpi.org> Subject: Re: [OMPI users] Installation of openmpi-1.10.7 fails Gilles, I have submitted that job with --mca io romio314. If it finishes, I will let you know. It is sitting in Conte’s queue at Purdue. As to Edgar’s question about the file system, here is the output of df -Th: vaskarpo@conte-fe00:~ $ df -Th Filesystem Type Size Used Avail Use% Mounted on /dev/sda1 ext4 435G 16G 398G 4% / tmpfs tmpfs 16G 1.4M 16G 1% /dev/shm persistent-nfs.rcac.purdue.edu:/persistent/home nfs 80T 64T 17T 80% /home persistent-nfs.rcac.purdue.edu:/persistent/apps nfs 8.0T 4.0T 4.1T 49% /apps mds-d01-ib.rcac.purdue.edu@o2ib1:mds-d02-ib.rcac.purdue.edu@o2ib1:/lustreD lustre 1.4P 994T 347T 75% /scratch/conte depotint-nfs.rcac.purdue.edu:/depot nfs 4.5P 3.0P 1.6P 66% /depot 172.18.84.186:/persistent/fsadmin nfs 200G 130G 71G 65% /usr/rmt_share/fsadmin The code is compiled in my $HOME and is run on the scratch. Cheers, Vahid > On Jan 18, 2018, at 10:14 PM, Gilles Gouaillardet > <gilles.gouaillar...@gmail.com> wrote: > > Vahid, > > i the v1.10 series, the default MPI-IO component was ROMIO based, and > in the v3 series, it is now ompio. > You can force the latest Open MPI to use the ROMIO based component > with mpirun --mca io romio314 ... > > That being said, your description (e.g. a hand edited file) suggests > that I/O is not performed with MPI-IO, which makes me very puzzled on > why the latest Open MPI is crashing. > > Cheers, > > Gilles > > On Fri, Jan 19, 2018 at 10:55 AM, Edgar Gabriel <egabr...@central.uh.edu> > wrote: >> I will try to reproduce this problem with 3.0.x, but it might take me >> a couple of days to get to it. >> >> Since it seemed to have worked with 2.0.x (except for the running out >> file handles problem), there is the suspicion that one of the fixes >> that we introduced since then is the problem. >> >> What file system did you run it on? NFS? >> >> Thanks >> >> Edgar >> >> >> On 1/18/2018 5:17 PM, Jeff Squyres (jsquyres) wrote: >>> >>> On Jan 18, 2018, at 5:53 PM, Vahid Askarpour <vh261...@dal.ca> wrote: >>>> >>>> My openmpi3.0.x run (called nscf run) was reading data from a >>>> routine Quantum Espresso input file edited by hand. The preliminary >>>> run (called scf >>>> run) was done with openmpi3.0.x on a similar input file also edited by >>>> hand. >>> >>> Gotcha. >>> >>> Well, that's a little disappointing. >>> >>> It would be good to understand why it is crashing -- is the app >>> doing something that is accidentally not standard? Is there a bug >>> in (soon to be >>> released) Open MPI 3.0.1? ...? >>> >> >> _______________________________________________ >> users mailing list >> users@lists.open-mpi.org >> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flist >> s.open-mpi.org%2Fmailman%2Flistinfo%2Fusers&data=02%7C01%7Cjohn.vinso >> n%40nist.gov%7C6fe0d5f26dd545205eb108d55f40b74e%7C2ab5d82fd8fa4797a93 >> e054655c61dec%7C1%7C1%7C636519653913113615&sdata=Vt%2BSdJFcvmdqEKgMPU >> ylYAd%2FdQMgTUEXiBPGzQkeSio%3D&reserved=0 > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists > .open-mpi.org%2Fmailman%2Flistinfo%2Fusers&data=02%7C01%7Cjohn.vinson% > 40nist.gov%7C6fe0d5f26dd545205eb108d55f40b74e%7C2ab5d82fd8fa4797a93e05 > 4655c61dec%7C1%7C1%7C636519653913113615&sdata=Vt%2BSdJFcvmdqEKgMPUylYA > d%2FdQMgTUEXiBPGzQkeSio%3D&reserved=0 _______________________________________________ users mailing list users@lists.open-mpi.org https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.open-mpi.org%2Fmailman%2Flistinfo%2Fusers&data=02%7C01%7Cjohn.vinson%40nist.gov%7C6fe0d5f26dd545205eb108d55f40b74e%7C2ab5d82fd8fa4797a93e054655c61dec%7C1%7C1%7C636519653913113615&sdata=Vt%2BSdJFcvmdqEKgMPUylYAd%2FdQMgTUEXiBPGzQkeSio%3D&reserved=0 _______________________________________________ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
