Hi,
today I tried to build openmpi-dev-1883-g7cce015 on my machines
(Solaris 10 Sparc, Solaris 10 x86_64, and openSUSE Linux 12.1
x86_64) with gcc-5.1.0 and Sun C 5.13/5.12. I got the following
error for gcc-5.1.0 and Sun C 5.12 on Linux and I didn't get any
errors on my Solaris machines for gcc-5.1.0 and Sun C 5.13.
I used the following command to configure the package for gcc.
../openmpi-dev-1883-g7cce015/configure
--prefix=/usr/local/openmpi-master_64_gcc \
--libdir=/usr/local/openmpi-master_64_gcc/lib64 \
--with-jdk-bindir=/usr/local/jdk1.8.0/bin \
--with-jdk-headers=/usr/local/jdk1.8.0/include \
JAVA_HOME=/usr/local/jdk1.8.0 \
LDFLAGS="-m64" CC="gcc" CXX="g++" FC="gfortran" \
CFLAGS="-m64" CXXFLAGS="-m64" FCFLAGS="-m64" \
CPP="cpp" CXXCPP="cpp" \
CPPFLAGS="" CXXCPPFLAGS="" \
--enable-mpi-cxx \
--enable-cxx-exceptions \
--enable-mpi-java \
--enable-heterogeneous \
--enable-mpi-thread-multiple \
--with-hwloc=internal \
--without-verbs \
--with-wrapper-cflags="-std=c11 -m64" \
--with-wrapper-cxxflags="-m64" \
--with-wrapper-fcflags="-m64" \
--enable-debug \
|& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
...
make install-exec-hook
make[3]: Entering directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_gcc'
WARNING! Common symbols found:
keyval_lex.o: 0000000000000004 C opal_util_keyval_yyleng
keyval_lex.o: 0000000000000008 C opal_util_keyval_yytext
show_help_lex.o: 0000000000000004 C opal_show_help_yyleng
show_help_lex.o: 0000000000000008 C opal_show_help_yytext
rmaps_rank_file_lex.o: 0000000000000004 C orte_rmaps_rank_file_leng
rmaps_rank_file_lex.o: 0000000000000008 C orte_rmaps_rank_file_text
hostfile_lex.o: 0000000000000004 C orte_util_hostfile_leng
hostfile_lex.o: 0000000000000008 C orte_util_hostfile_text
mpi-f08-types.o: 0000000000000004 C mpi_fortran_argv_null
mpi-f08-types.o: 0000000000000004 C mpi_fortran_argvs_null
[...]
skipping remaining symbols. To see all symbols, run:
../openmpi-dev-1883-g7cce015/config/find_common_syms --top_builddir=.
--top_srcdir=../openmpi-dev-1883-g7cce015 --objext=o
make[3]: [install-exec-hook] Error 1 (ignored)
make[3]: Leaving directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_gcc'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_gcc'
make[1]: Leaving directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_gcc'
linpc1 openmpi-dev-1883-g7cce015-Linux.x86_64.64_gcc 130
linpc1 openmpi-dev-1883-g7cce015-Linux.x86_64.64_gcc 130
../openmpi-dev-1883-g7cce015/config/find_common_syms --top_builddir=.
--top_srcdir=../openmpi-dev-1883-g7cce015 --objext=o
WARNING! Common symbols found:
keyval_lex.o: 0000000000000004 C opal_util_keyval_yyleng
keyval_lex.o: 0000000000000008 C opal_util_keyval_yytext
show_help_lex.o: 0000000000000004 C opal_show_help_yyleng
show_help_lex.o: 0000000000000008 C opal_show_help_yytext
rmaps_rank_file_lex.o: 0000000000000004 C orte_rmaps_rank_file_leng
rmaps_rank_file_lex.o: 0000000000000008 C orte_rmaps_rank_file_text
hostfile_lex.o: 0000000000000004 C orte_util_hostfile_leng
hostfile_lex.o: 0000000000000008 C orte_util_hostfile_text
mpi-f08-types.o: 0000000000000004 C mpi_fortran_argv_null
mpi-f08-types.o: 0000000000000004 C mpi_fortran_argvs_null
mpi-f08-types.o: 0000000000000004 C mpi_fortran_bottom
mpi-f08-types.o: 0000000000000004 C mpi_fortran_errcodes_ignore
mpi-f08-types.o: 0000000000000004 C mpi_fortran_in_place
mpi-f08-types.o: 0000000000000018 C mpi_fortran_status_ignore
mpi-f08-types.o: 0000000000000018 C mpi_fortran_statuses_ignore
mpi-f08-types.o: 0000000000000004 C mpi_fortran_unweighted
mpi-f08-types.o: 0000000000000004 C mpi_fortran_weights_empty
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_2complex
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_2double_complex
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_2double_precision
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_2integer
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_2real
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_band
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_bor
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_bxor
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_byte
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_character
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_comm_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_comm_self
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_comm_world
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_complex
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_complex16
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_complex32
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_complex8
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_datatype_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_double_complex
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_double_precision
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_errhandler_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_errors_are_fatal
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_errors_return
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_file_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_group_empty
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_group_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_info_env
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_info_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_integer
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_integer1
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_integer16
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_integer2
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_integer4
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_integer8
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_land
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_lb
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_logical
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_logical1
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_logical2
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_logical4
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_logical8
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_lor
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_lxor
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_max
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_maxloc
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_message_no_proc
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_message_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_min
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_minloc
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_op_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_packed
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_prod
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_real
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_real16
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_real2
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_real4
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_real8
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_replace
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_request_null
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_sum
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_ub
mpi-f08-types.o: 0000000000000004 C ompi_f08_mpi_win_null
shmem_ShMem.o: 0000000000000010 C shmem_java
shmem_ShMem.o: 00000000000001f8 C shmem_java_buffers
linpc1 openmpi-dev-1883-g7cce015-Linux.x86_64.64_gcc 131
...
make install-exec-hook
make[3]: Entering directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_cc'
WARNING! Common symbols found:
keyval_lex.o: 0000000000000004 C opal_util_keyval_yyleng
keyval_lex.o: 0000000000000008 C opal_util_keyval_yytext
show_help_lex.o: 0000000000000004 C opal_show_help_yyleng
show_help_lex.o: 0000000000000008 C opal_show_help_yytext
rmaps_rank_file_lex.o: 0000000000000004 C orte_rmaps_rank_file_leng
rmaps_rank_file_lex.o: 0000000000000008 C orte_rmaps_rank_file_text
hostfile_lex.o: 0000000000000004 C orte_util_hostfile_leng
hostfile_lex.o: 0000000000000008 C orte_util_hostfile_text
shmem_ShMem.o: 0000000000000010 C shmem_java
shmem_ShMem.o: 00000000000001f8 C shmem_java_buffers
make[3]: [install-exec-hook] Error 1 (ignored)
make[3]: Leaving directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_cc'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_cc'
make[1]: Leaving directory
`/export2/src/openmpi-master/openmpi-dev-1883-g7cce015-Linux.x86_64.64_cc'
linpc1 openmpi-dev-1883-g7cce015-Linux.x86_64.64_cc 130
linpc1 openmpi-dev-1883-g7cce015-Linux.x86_64.64_cc 130
../openmpi-dev-1883-g7cce015/config/find_common_syms --top_builddir=.
--top_srcdir=../openmpi-dev-1883-g7cce015 --objext=o
WARNING! Common symbols found:
keyval_lex.o: 0000000000000004 C opal_util_keyval_yyleng
keyval_lex.o: 0000000000000008 C opal_util_keyval_yytext
show_help_lex.o: 0000000000000004 C opal_show_help_yyleng
show_help_lex.o: 0000000000000008 C opal_show_help_yytext
rmaps_rank_file_lex.o: 0000000000000004 C orte_rmaps_rank_file_leng
rmaps_rank_file_lex.o: 0000000000000008 C orte_rmaps_rank_file_text
hostfile_lex.o: 0000000000000004 C orte_util_hostfile_leng
hostfile_lex.o: 0000000000000008 C orte_util_hostfile_text
shmem_ShMem.o: 0000000000000010 C shmem_java
shmem_ShMem.o: 00000000000001f8 C shmem_java_buffers
linpc1 openmpi-dev-1883-g7cce015-Linux.x86_64.64_cc 131
Kind regards
Siegmar
