If you are running on a Slurm-managed cluster, it won't be happy without configuring --with-slurm - you won't see the allocation, for one.
Is it just the --with-slurm option that causes the problem? In other words, if you remove the rest of those options (starting --with-hcoll and going down that config line) and leave --with-slurm, does it build? On Mar 16, 2014, at 8:22 AM, Filippo Spiga <spiga.fili...@gmail.com> wrote: > Hi Jeff, Hi Ake, > > removing --with-slurm and keeping --with-hcoll seems to work. The error > disappears at compile time, I have not yet tried to run a job. I can copy > config.log and the make.log is needed. > > Cheers, > F > > On Mar 11, 2014, at 4:48 PM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> > wrote: >> On Mar 11, 2014, at 11:22 AM, Åke Sandgren <ake.sandg...@hpc2n.umu.se> wrote: >> >>>>> ../configure CC=pgcc CXX=pgCC FC=pgf90 F90=pgf90 >>>>> --prefix=/usr/local/Cluster-Users/fs395/openmpi-1.7.4/pgi-14.2_cuda-6.0RC >>>>> --enable-mpirun-prefix-by-default --with-hcoll=$HCOLL_DIR >>>>> --with-fca=$FCA_DIR --with-mxm=$MXM_DIR --with-knem=$KNEM_DIR >>>>> --with-slurm=/usr/local/Cluster-Apps/slurm --with-cuda=$CUDA_INSTALL_PATH >>>>> >>>>> >>>>> At some point the compile process fails with this error: >>>>> >>>>> make[2]: Leaving directory >>>>> `/home/fs395/archive/openmpi-1.7.4/build/ompi/mca/coll/hierarch' >>>>> Making all in mca/coll/hcoll >>>>> make[2]: Entering directory >>>>> `/home/fs395/archive/openmpi-1.7.4/build/ompi/mca/coll/hcoll' >>>>> CC coll_hcoll_module.lo >>>>> CC coll_hcoll_component.lo >>>>> CC coll_hcoll_rte.lo >>>>> CC coll_hcoll_ops.lo >>>>> CCLD mca_coll_hcoll.la >>>>> pgcc-Error-Unknown switch: -pthread >>> >>> You have to remove the -pthread from inherited_linker_flags= >>> in libpmi.la libslurm.la from your slurm build. >> >> With the configure line given above, I don't think he should be linking >> against libslurm. >> >> But I wonder if the underlying issue is actually correct: perhaps the >> inherited_linker_flags from libhcoll.la has -pthreads in it. > > > -- > Mr. Filippo SPIGA, M.Sc. > http://www.linkedin.com/in/filippospiga ~ skype: filippo.spiga > > «Nobody will drive us out of Cantor's paradise.» ~ David Hilbert > > ***** > Disclaimer: "Please note this message and any attachments are CONFIDENTIAL > and may be privileged or otherwise protected from disclosure. The contents > are not to be disclosed to anyone other than the addressee. Unauthorized > recipients are requested to preserve this confidentiality and to advise the > sender immediately of any error in transmission." > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
