On 03/11/2014 04:12 PM, Jeff Squyres (jsquyres) wrote:
I don't see the config.log and make.log attached - can you send all the info
requested here (including config.log and config.out):
http://www.open-mpi.org/community/help/
Can you also send "make V=1" output as well?
On Feb 25, 2014, at 6:22 PM, Filippo Spiga <spiga.fili...@gmail.com> wrote:
Dear all,
I came across another small issue while I was compiling Open MPI 1.7.4 using
PGI 14.2 and building the support for Mellanox Hierarchical Collectives
(--with-hcoll). Here you how configure Open MPI:
export MXM_DIR=/opt/mellanox/mxm
export KNEM_DIR=$(find /opt -maxdepth 1 -type d -name "knem*" -print0)
export FCA_DIR=/opt/mellanox/fca
export HCOLL_DIR=/opt/mellanox/hcoll
../configure CC=pgcc CXX=pgCC FC=pgf90 F90=pgf90
--prefix=/usr/local/Cluster-Users/fs395/openmpi-1.7.4/pgi-14.2_cuda-6.0RC
--enable-mpirun-prefix-by-default --with-hcoll=$HCOLL_DIR --with-fca=$FCA_DIR
--with-mxm=$MXM_DIR --with-knem=$KNEM_DIR
--with-slurm=/usr/local/Cluster-Apps/slurm --with-cuda=$CUDA_INSTALL_PATH
At some point the compile process fails with this error:
make[2]: Leaving directory
`/home/fs395/archive/openmpi-1.7.4/build/ompi/mca/coll/hierarch'
Making all in mca/coll/hcoll
make[2]: Entering directory
`/home/fs395/archive/openmpi-1.7.4/build/ompi/mca/coll/hcoll'
CC coll_hcoll_module.lo
CC coll_hcoll_component.lo
CC coll_hcoll_rte.lo
CC coll_hcoll_ops.lo
CCLD mca_coll_hcoll.la
pgcc-Error-Unknown switch: -pthread
You have to remove the -pthread from inherited_linker_flags=
in libpmi.la libslurm.la from your slurm build.
pgi doesn't under stand it and the default slurm build (with gcc at
least) adds that causing the problem.
--
Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden
Internet: a...@hpc2n.umu.se Phone: +46 90 7866134 Fax: +46 90-580 14
Mobile: +46 70 7716134 WWW: http://www.hpc2n.umu.se
