Hi, The above issue fixed w/ this patch I used: https://raw.github.com/sebhtml/patches/master/openmpi/Raspberry-Pi-openmpi-1.6.2.patch
Is that possible OpenMPI can contain this patch in the future? Thanks. On Sun, Jan 20, 2013 at 3:13 AM, Lee Eric <openlinuxsou...@gmail.com> wrote: > Hi, > > I just use --disable-mpif77 and --disable-mpif90 to let configure run > well. However, I know it's only tough workround. After configured > well, I encounter following error when run make: > > Making all in config > make[1]: Entering directory `/home/huli/Projects/openmpi-1.6.3/config' > make[1]: Nothing to be done for `all'. > make[1]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/config' > Making all in contrib > make[1]: Entering directory `/home/huli/Projects/openmpi-1.6.3/contrib' > make[1]: Nothing to be done for `all'. > make[1]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/contrib' > Making all in opal > make[1]: Entering directory `/home/huli/Projects/openmpi-1.6.3/opal' > Making all in include > make[2]: Entering directory `/home/huli/Projects/openmpi-1.6.3/opal/include' > make all-am > make[3]: Entering directory `/home/huli/Projects/openmpi-1.6.3/opal/include' > make[3]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/opal/include' > make[2]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/opal/include' > Making all in libltdl > make[2]: Entering directory `/home/huli/Projects/openmpi-1.6.3/opal/libltdl' > make all-am > make[3]: Entering directory `/home/huli/Projects/openmpi-1.6.3/opal/libltdl' > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo > -c -o dlopen.lo `test -f 'loaders/dlopen.c' || echo > './'`loaders/dlopen.c > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT libltdlc_la-preopen.lo -MD -MP -MF > .deps/libltdlc_la-preopen.Tpo -c -o libltdlc_la-preopen.lo `test -f > 'loaders/preopen.c' || echo './'`loaders/preopen.c > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT libltdlc_la-lt__alloc.lo -MD -MP -MF > .deps/libltdlc_la-lt__alloc.Tpo -c -o libltdlc_la-lt__alloc.lo `test > -f 'lt__alloc.c' || echo './'`lt__alloc.c > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF > .deps/libltdlc_la-lt_dlloader.Tpo -c -o libltdlc_la-lt_dlloader.lo > `test -f 'lt_dlloader.c' || echo './'`lt_dlloader.c > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT libltdlc_la-lt_error.lo -MD -MP -MF > .deps/libltdlc_la-lt_error.Tpo -c -o libltdlc_la-lt_error.lo `test -f > 'lt_error.c' || echo './'`lt_error.c > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT libltdlc_la-ltdl.lo -MD -MP -MF > .deps/libltdlc_la-ltdl.Tpo -c -o libltdlc_la-ltdl.lo `test -f 'ltdl.c' > || echo './'`ltdl.c > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT libltdlc_la-slist.lo -MD -MP -MF > .deps/libltdlc_la-slist.Tpo -c -o libltdlc_la-slist.lo `test -f > 'slist.c' || echo './'`slist.c > /bin/sh ./libtool --tag=CC --mode=compile > armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast > -mfpu=vfp -mfloat-abi=hard -MT lt__strl.lo -MD -MP -MF > .deps/lt__strl.Tpo -c -o lt__strl.lo lt__strl.c > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. > -Ilibltdl -I./libltdl -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT libltdlc_la-lt__alloc.lo -MD -MP -MF > .deps/libltdlc_la-lt__alloc.Tpo -c lt__alloc.c -fPIC -DPIC -o > .libs/libltdlc_la-lt__alloc.o > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. > -Ilibltdl -I./libltdl -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT libltdlc_la-preopen.lo -MD -MP -MF > .deps/libltdlc_la-preopen.Tpo -c loaders/preopen.c -fPIC -DPIC -o > .libs/libltdlc_la-preopen.o > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. > -Ilibltdl -I./libltdl -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT libltdlc_la-lt_error.lo -MD -MP -MF > .deps/libltdlc_la-lt_error.Tpo -c lt_error.c -fPIC -DPIC -o > .libs/libltdlc_la-lt_error.o > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT lt__strl.lo -MD -MP -MF .deps/lt__strl.Tpo -c > lt__strl.c -fPIC -DPIC -o .libs/lt__strl.o > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl > -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c > loaders/dlopen.c -fPIC -DPIC -o .libs/dlopen.o > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. > -Ilibltdl -I./libltdl -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF > .deps/libltdlc_la-lt_dlloader.Tpo -c lt_dlloader.c -fPIC -DPIC -o > .libs/libltdlc_la-lt_dlloader.o > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. > -Ilibltdl -I./libltdl -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT libltdlc_la-ltdl.lo -MD -MP -MF > .deps/libltdlc_la-ltdl.Tpo -c ltdl.c -fPIC -DPIC -o > .libs/libltdlc_la-ltdl.o > libtool: compile: armv6-rpi-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. > -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. > -Ilibltdl -I./libltdl -I./libltdl > -I/home/huli/Projects/openmpi-1.6.3/opal/mca/hwloc/hwloc132/hwloc/include > -I/usr/include/infiniband -I/usr/include/infiniband -Ofast -mfpu=vfp > -mfloat-abi=hard -MT libltdlc_la-slist.lo -MD -MP -MF > .deps/libltdlc_la-slist.Tpo -c slist.c -fPIC -DPIC -o > .libs/libltdlc_la-slist.o > mv -f .deps/dlopen.Tpo .deps/dlopen.Plo > /bin/sh ./libtool --tag=CC --mode=link armv6-rpi-linux-gnueabi-gcc > -Ofast -mfpu=vfp -mfloat-abi=hard -module -avoid-version -o dlopen.la > dlopen.lo -ldl -ldl -lrt -lnsl -lutil -lm > mv -f .deps/libltdlc_la-lt__alloc.Tpo .deps/libltdlc_la-lt__alloc.Plo > mv -f .deps/lt__strl.Tpo .deps/lt__strl.Plo > mv -f .deps/libltdlc_la-lt_error.Tpo .deps/libltdlc_la-lt_error.Plo > mv -f .deps/libltdlc_la-preopen.Tpo .deps/libltdlc_la-preopen.Plo > mv -f .deps/libltdlc_la-lt_dlloader.Tpo .deps/libltdlc_la-lt_dlloader.Plo > libtool: link: armv6-rpi-linux-gnueabi-ar cru .libs/dlopen.a .libs/dlopen.o > libtool: link: armv6-rpi-linux-gnueabi-ranlib .libs/dlopen.a > mv -f .deps/libltdlc_la-slist.Tpo .deps/libltdlc_la-slist.Plo > libtool: link: ( cd ".libs" && rm -f "dlopen.la" && ln -s > "../dlopen.la" "dlopen.la" ) > mv -f .deps/libltdlc_la-ltdl.Tpo .deps/libltdlc_la-ltdl.Plo > /bin/sh ./libtool --tag=CC --mode=link armv6-rpi-linux-gnueabi-gcc > -Ofast -mfpu=vfp -mfloat-abi=hard -no-undefined -dlpreopen dlopen.la > -o libltdlc.la libltdlc_la-preopen.lo libltdlc_la-lt__alloc.lo > libltdlc_la-lt_dlloader.lo libltdlc_la-lt_error.lo libltdlc_la-ltdl.lo > libltdlc_la-slist.lo lt__strl.lo -ldl -lrt -lnsl -lutil -lm > libtool: link: rm -f .libs/libltdlc.nm .libs/libltdlc.nmS .libs/libltdlc.nmT > libtool: link: (cd .libs && armv6-rpi-linux-gnueabi-gcc -Ofast > -mfpu=vfp -mfloat-abi=hard -c -fno-builtin -fPIC -DPIC "libltdlcS.c") > libtool: link: rm -f ".libs/libltdlcS.c" ".libs/libltdlc.nm" > ".libs/libltdlc.nmS" ".libs/libltdlc.nmT" > libtool: link: (cd .libs/libltdlc.lax/dlopen.a && > armv6-rpi-linux-gnueabi-ar x > "/home/huli/Projects/openmpi-1.6.3/opal/libltdl/./.libs/dlopen.a") > libtool: link: armv6-rpi-linux-gnueabi-ar cru .libs/libltdlc.a > .libs/libltdlc_la-preopen.o .libs/libltdlc_la-lt__alloc.o > .libs/libltdlc_la-lt_dlloader.o .libs/libltdlc_la-lt_error.o > .libs/libltdlc_la-ltdl.o .libs/libltdlc_la-slist.o .libs/lt__strl.o > .libs/libltdlcS.o .libs/libltdlc.lax/dlopen.a/dlopen.o > libtool: link: armv6-rpi-linux-gnueabi-ranlib .libs/libltdlc.a > libtool: link: rm -fr .libs/libltdlc.lax > libtool: link: ( cd ".libs" && rm -f "libltdlc.la" && ln -s > "../libltdlc.la" "libltdlc.la" ) > make[3]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/opal/libltdl' > make[2]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/opal/libltdl' > Making all in asm > make[2]: Entering directory `/home/huli/Projects/openmpi-1.6.3/opal/asm' > rm -f atomic-asm.S > CC asm.lo > ln -s "../../opal/asm/generated/atomic-local.s" atomic-asm.S > CPPAS atomic-asm.lo > atomic-asm.S: Assembler messages: > atomic-asm.S:7: Error: selected processor does not support ARM mode `dmb' > atomic-asm.S:15: Error: selected processor does not support ARM mode `dmb' > atomic-asm.S:23: Error: selected processor does not support ARM mode `dmb' > atomic-asm.S:55: Error: selected processor does not support ARM mode `dmb' > atomic-asm.S:70: Error: selected processor does not support ARM mode `dmb' > make[2]: *** [atomic-asm.lo] Error 1 > make[2]: *** Waiting for unfinished jobs.... > make[2]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/opal/asm' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/home/huli/Projects/openmpi-1.6.3/opal' > make: *** [all-recursive] Error 1 > > Here's my toolchain's gcc details. > > [huli@localhost openmpi-1.6.3]$ armv6-rpi-linux-gnueabi-gcc -v > Using built-in specs. > COLLECT_GCC=armv6-rpi-linux-gnueabi-gcc > COLLECT_LTO_WRAPPER=/home/huli/Projects/arm-devel-rpi/libexec/gcc/arm-rpi-linux-gnueabi/4.7.3/lto-wrapper > Target: arm-rpi-linux-gnueabi > Configured with: > /home/huli/Projects/ct-rpi/.build/src/gcc-linaro-4.7-2012.10/configure > --build=x86_64-build_unknown-linux-gnu > --host=x86_64-build_unknown-linux-gnu --target=arm-rpi-linux-gnueabi > --prefix=/home/huli/Projects/arm-devel-rpi > --with-sysroot=/home/huli/Projects/arm-devel-rpi/arm-rpi-linux-gnueabi/sysroot > --enable-languages=c,c++,fortran --with-arch=armv6zk > --with-cpu=arm1176jzf-s --with-tune=arm1176jzf-s --with-fpu=vfp > --with-float=hard --with-pkgversion='crosstool-NG 1.17.0' > --enable-__cxa_atexit --disable-libmudflap --disable-libgomp > --disable-libssp --disable-libquadmath --disable-libquadmath-support > --with-gmp=/home/huli/Projects/ct-rpi/.build/arm-rpi-linux-gnueabi/buildtools > --with-mpfr=/home/huli/Projects/ct-rpi/.build/arm-rpi-linux-gnueabi/buildtools > --with-mpc=/home/huli/Projects/ct-rpi/.build/arm-rpi-linux-gnueabi/buildtools > --with-ppl=/home/huli/Projects/ct-rpi/.build/arm-rpi-linux-gnueabi/buildtools > --with-cloog=/home/huli/Projects/ct-rpi/.build/arm-rpi-linux-gnueabi/buildtools > --with-libelf=/home/huli/Projects/ct-rpi/.build/arm-rpi-linux-gnueabi/buildtools > --with-host-libstdcxx='-static-libgcc -Wl,-Bstatic,-lstdc++,-Bdynamic > -lm -L/home/huli/Projects/ct-rpi/.build/arm-rpi-linux-gnueabi/buildtools/lib > -lpwl' --enable-threads=posix --enable-target-optspace --disable-nls > --disable-multilib > --with-local-prefix=/home/huli/Projects/arm-devel-rpi/arm-rpi-linux-gnueabi/sysroot > --enable-c99 --enable-long-long --with-float=hard > Thread model: posix > gcc version 4.7.3 20121001 (prerelease) (crosstool-NG 1.17.0) > > Anyone have idea? > > Thanks. > > Eric > > On Sun, Jan 20, 2013 at 2:05 AM, Lee Eric <openlinuxsou...@gmail.com> wrote: >> Hi, >> >> The cross-compile issue I fixed. Check following source code: >> opal_config_asm.m4:897: [AC_MSG_ERROR([No atomic primitives available >> for $host])]) >> >> It seems that checks the toolchain's tuple is one of: armv7* or armv6* >> or armv5*. I have recompiled my toolchain and no such error occurred. >> However, I hit another issue about fortran as configure running. >> >> *** Fortran 90/95 compiler >> checking for armv6-rpi-linux-gnueabi-gfortran... >> armv6-rpi-linux-gnueabi-gfortran >> checking whether we are using the GNU Fortran compiler... yes >> checking whether armv6-rpi-linux-gnueabi-gfortran accepts -g... yes >> checking if Fortran 77 compiler works... links (cross compiling) >> checking armv6-rpi-linux-gnueabi-gfortran external symbol >> convention... single underscore >> checking if C and Fortran 77 are link compatible... yes >> checking to see if F77 compiler likes the C++ exception flags... >> skipped (no C++ exceptions flags) >> checking to see if mpif77/mpif90 compilers need additional linker flags... >> none >> checking if Fortran 77 compiler supports CHARACTER... yes >> checking size of Fortran 77 CHARACTER... configure: error: Can not >> determine size of CHARACTER when cross-compiling >> >> Any hint? Thanks. >> >> Eric >> >> On Sat, Jan 19, 2013 at 10:08 PM, Lee Eric <openlinuxsou...@gmail.com> wrote: >>> Any heads up? Thanks. >>> >>> On Fri, Jan 18, 2013 at 5:28 AM, Jeff Squyres (jsquyres) >>> <jsquy...@cisco.com> wrote: >>>> On Jan 16, 2013, at 6:41 AM, Leif Lindholm <leif.lindh...@arm.com> wrote: >>>> >>>>> That isn't, technically speaking, correct for the Raspberry Pi - but it >>>>> is a workaround if you know you will never actually use the asm >>>>> implementations of the atomics, but only the inline C ones.. >>>>> >>>>> This sort of hides the problem that the dedicated barrier instructions >>>>> were not available in ARMv6 (it used "system control coprocessor >>>>> operations" instead. >>>>> >>>>> If you ever executed the asm implementation, you would trigger an >>>>> undefined instruction exception on the Pi. >>>> >>>> Hah; sweet. Ok. >>>> >>>> So what's the right answer? Would it be acceptable to use a no-op for >>>> this operation on such architectures? >>>> >>>> -- >>>> Jeff Squyres >>>> jsquy...@cisco.com >>>> For corporate legal information go to: >>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>> >>>> >>>> _______________________________________________ >>>> users mailing list >>>> us...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
