My apologies, I haven't searched in the FAQs before posting, just in the mailing list. Indeed I needed to specify the CXX compiler. These are the steps I followed to compile it:
source /home/thomas/Programs/Intel_Compilers/bin/compilervars.sh intel64 ./configure CC=icc CXX=icpc F77=ifort FC=ifort make -j8 ## since "make install" must be run with sudo, you must add the Intel directories into the superuser environment variables sudo bash source /home/thomas/Programs/Intel_Compilers/bin/compilervars.sh intel64 make install Thomas On 10 October 2012 11:51, Matthias Jurenz <matthias.jur...@tu-dresden.de>wrote: > Hello Thomas, > this error typically occurs when different compiler suites used for > compiling > C/C++ mixed source code. > Please add CXX=icpc to your configure command in order to use a single > compiler > suite (=Intel) for compiling Open MPI. Otherwise, CXX is set to the default > compiler (=g++) which isn't suitable for linking objects generated by the > Intel compiler. > Regards, > Matthias > > On Oct 9, 2012, at 5:25 PM, Thomas Evangelidis wrote: > > Greetings, > > > I am trying to compile openmpi 1.6.2 on Fedora 17 64-bit using the intel > compilers (icc and ifort version 13.0.0) but I am getting an error which I > cannot trace back. These are the steps I followed: > > > ./configure CC=icc F77=ifort > make > ........ > ........ > util.o: In function `guess_strlen': > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:45: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:61: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > util.o:/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > more undefined references to `__intel_sse2_strlen' follow > util.o: In function `vt_vsnprintf': > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:255: > undefined reference to `__intel_sse2_strcpy' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:257: > undefined reference to `_intel_fast_memcpy' > util.o: In function `guess_strlen': > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:61: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > util.o:/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > more undefined references to `__intel_sse2_strlen' follow > util.o: In function `vt_vsnprintf': > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:255: > undefined reference to `__intel_sse2_strcpy' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:257: > undefined reference to `_intel_fast_memcpy' > util.o: In function `guess_strlen': > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:61: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > undefined reference to `__intel_sse2_strlen' > > util.o:/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:46: > more undefined references to `__intel_sse2_strlen' follow > util.o: In function `vt_strdup': > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:278: > undefined reference to `__intel_sse2_strcpy' > util.o: In function `vt_strtrim': > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:286: > undefined reference to `__intel_sse2_strlen' > > /home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool/../../../util/util.c:293: > undefined reference to `_intel_fast_memcpy' > collect2: ld returned 1 exit status > make[7]: *** [opari] Error 1 > make[7]: Leaving directory > `/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari/tool' > make[6]: *** [all-recursive] Error 1 > make[6]: Leaving directory > `/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools/opari' > make[5]: *** [all-recursive] Error 1 > make[5]: Leaving directory > `/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt/tools' > make[4]: *** [all-recursive] Error 1 > make[4]: Leaving directory > `/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt' > make[3]: *** [all] Error 2 > make[3]: Leaving directory > `/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt/vt' > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory > `/home/thomas/Programs/openmpi-1.6.2/ompi/contrib/vt' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/home/thomas/Programs/openmpi-1.6.2/ompi' > make: *** [all-recursive] Error 1 > > > Can anyone please help me fix it? > > > Thanks in advance, > Thomas > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > -- ====================================================================== Thomas Evangelidis PhD student University of Athens Faculty of Pharmacy Department of Pharmaceutical Chemistry Panepistimioupoli-Zografou 157 71 Athens GREECE email: tev...@pharm.uoa.gr teva...@gmail.com website: https://sites.google.com/site/thomasevangelidishomepage/
