Hi,everyone! I am trying to install LAMMPS which is linked to openmpi 1.3.3 on a Linux service. I can run simulations in serial computing successfully.But when I submit jobs to compute parallelly after setting environment in .bash_profile , jobs exit soon with an err. The following is the err info.( I use 8 CPUs and the service use LSF platform. " /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi" is the path of my executable file): /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: symbol lookup error: /datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi: undefined symbol: __libm_error_support -------------------------------------------------------------------------- mpirun.openmpi has exited due to process rank 6 with PID 21520 on node T4601 exiting without calling "finalize". This may have caused other processes in the application to be terminated by signals sent by mpirun.openmpi (as reported here). -------------------------------------------------------------------------- The following is the script to running parallelly I use : #BSUB -W 60 #BSUB -a openmpi #BSUB -n 8 #BSUB -q x64_small #BSUB -J qiuzy #BSUB -o m.out #BSUB -e m.err
mpirun.lsf "/datastore/workspace/zyli/qiuzy/test-3/lmp_openmpi -in in.grastab -log log1.grastab" How can i solve it?? Thank you for your time and help!! yours sincerely Z.Y.Qiu 10/10/2012
