Try adding "-mca btl ^openib" to your cmd line and see if that cleans it up.
On Sep 15, 2012, at 12:44 PM, John Chludzinski <john.chludzin...@gmail.com> wrote: > There was a bug in the code. So now I get this, which is correct but how do > I get rid of all these ABI, CMA, etc. messages? > > $ mpiexec -n 4 ./a.out > librdmacm: couldn't read ABI version. > librdmacm: couldn't read ABI version. > librdmacm: assuming: 4 > CMA: unable to get RDMA device list > librdmacm: assuming: 4 > CMA: unable to get RDMA device list > CMA: unable to get RDMA device list > librdmacm: couldn't read ABI version. > librdmacm: assuming: 4 > librdmacm: couldn't read ABI version. > librdmacm: assuming: 4 > CMA: unable to get RDMA device list > -------------------------------------------------------------------------- > [[6110,1],1]: A high-performance Open MPI point-to-point messaging module > was unable to find any relevant network interfaces: > > Module: OpenFabrics (openib) > Host: elzbieta > > Another transport will be used instead, although this may result in > lower performance. > -------------------------------------------------------------------------- > rank= 1 Results: 5.0000000 6.0000000 7.0000000 > 8.0000000 > rank= 2 Results: 9.0000000 10.000000 11.000000 > 12.000000 > rank= 0 Results: 1.0000000 2.0000000 3.0000000 > 4.0000000 > rank= 3 Results: 13.000000 14.000000 15.000000 > 16.000000 > [elzbieta:02559] 3 more processes have sent help message > help-mpi-btl-base.txt / btl:no-nics > [elzbieta:02559] Set MCA parameter "orte_base_help_aggregate" to 0 to see all > help / error messages > > > On Sat, Sep 15, 2012 at 3:34 PM, John Chludzinski > <john.chludzin...@gmail.com> wrote: > BTW, here the example code: > > program scatter > include 'mpif.h' > > integer, parameter :: SIZE=4 > integer :: numtasks, rank, sendcount, recvcount, source, ierr > real :: sendbuf(SIZE,SIZE), recvbuf(SIZE) > > ! Fortran stores this array in column major order, so the > ! scatter will actually scatter columns, not rows. > data sendbuf /1.0, 2.0, 3.0, 4.0, & > 5.0, 6.0, 7.0, 8.0, & > 9.0, 10.0, 11.0, 12.0, & > 13.0, 14.0, 15.0, 16.0 / > > call MPI_INIT(ierr) > call MPI_COMM_RANK(MPI_COMM_WORLD, rank, ierr) > call MPI_COMM_SIZE(MPI_COMM_WORLD, numtasks, ierr) > > if (numtasks .eq. SIZE) then > source = 1 > sendcount = SIZE > recvcount = SIZE > call MPI_SCATTER(sendbuf, sendcount, MPI_REAL, recvbuf, & > recvcount, MPI_REAL, source, MPI_COMM_WORLD, ierr) > print *, 'rank= ',rank,' Results: ',recvbuf > else > print *, 'Must specify',SIZE,' processors. Terminating.' > endif > > call MPI_FINALIZE(ierr) > > end program > > > On Sat, Sep 15, 2012 at 3:02 PM, John Chludzinski > <john.chludzin...@gmail.com> wrote: > # export LD_LIBRARY_PATH > > > # mpiexec -n 1 printenv | grep PATH > LD_LIBRARY_PATH=/usr/lib/openmpi/lib/ > > PATH=/usr/lib/openmpi/bin/:/usr/lib/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/jski/.local/bin:/home/jski/bin > MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles > WINDOWPATH=1 > > # mpiexec -n 4 ./a.out > librdmacm: couldn't read ABI version. > librdmacm: assuming: 4 > CMA: unable to get RDMA device list > -------------------------------------------------------------------------- > [[3598,1],0]: A high-performance Open MPI point-to-point messaging module > was unable to find any relevant network interfaces: > > Module: OpenFabrics (openib) > Host: elzbieta > > Another transport will be used instead, although this may result in > lower performance. > -------------------------------------------------------------------------- > librdmacm: couldn't read ABI version. > librdmacm: assuming: 4 > librdmacm: couldn't read ABI version. > CMA: unable to get RDMA device list > librdmacm: assuming: 4 > CMA: unable to get RDMA device list > librdmacm: couldn't read ABI version. > librdmacm: assuming: 4 > CMA: unable to get RDMA device list > [elzbieta:4145] *** An error occurred in MPI_Scatter > [elzbieta:4145] *** on communicator MPI_COMM_WORLD > [elzbieta:4145] *** MPI_ERR_TYPE: invalid datatype > [elzbieta:4145] *** MPI_ERRORS_ARE_FATAL: your MPI job will now abort > -------------------------------------------------------------------------- > mpiexec has exited due to process rank 1 with PID 4145 on > node elzbieta exiting improperly. There are two reasons this could occur: > > 1. this process did not call "init" before exiting, but others in > the job did. This can cause a job to hang indefinitely while it waits > for all processes to call "init". By rule, if one process calls "init", > then ALL processes must call "init" prior to termination. > > 2. this process called "init", but exited without calling "finalize". > By rule, all processes that call "init" MUST call "finalize" prior to > exiting or it will be considered an "abnormal termination" > > This may have caused other processes in the application to be > terminated by signals sent by mpiexec (as reported here). > -------------------------------------------------------------------------- > > > > On Sat, Sep 15, 2012 at 2:24 PM, Ralph Castain <r...@open-mpi.org> wrote: > Ah - note that there is no LD_LIBRARY_PATH in the environment. That's the > problem > > On Sep 15, 2012, at 11:19 AM, John Chludzinski <john.chludzin...@gmail.com> > wrote: > >> $ which mpiexec >> /usr/lib/openmpi/bin/mpiexec >> >> # mpiexec -n 1 printenv | grep PATH >> PATH=/usr/lib/openmpi/bin/:/usr/lib/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/jski/.local/bin:/home/jski/bin >> MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles >> WINDOWPATH=1 >> >> >> >> On Sat, Sep 15, 2012 at 1:11 PM, Ralph Castain <r...@open-mpi.org> wrote: >> Couple of things worth checking: >> >> 1. verify that you executed the "mpiexec" you think you did - a simple >> "which mpiexec" should suffice >> >> 2. verify that your environment is correct by "mpiexec -n 1 printenv | grep >> PATH". Sometimes the ld_library_path doesn't carry over like you think it >> should >> >> >> On Sep 15, 2012, at 10:00 AM, John Chludzinski <john.chludzin...@gmail.com> >> wrote: >> >>> I installed OpenMPI (I have a simple dual core AMD notebook with Fedora 16) >>> via: >>> >>> # yum install openmpi >>> # yum install openmpi-devel >>> # mpirun --version >>> mpirun (Open MPI) 1.5.4 >>> >>> I added: >>> >>> $ PATH=PATH=/usr/lib/openmpi/bin/:$PATH >>> $ LD_LIBRARY_PATH=/usr/lib/openmpi/lib/ >>> >>> Then: >>> >>> $ mpif90 ex1.f95 >>> $ mpiexec -n 4 ./a.out >>> ./a.out: error while loading shared libraries: libmpi_f90.so.1: cannot open >>> shared object file: No such file or directory >>> ./a.out: error while loading shared libraries: libmpi_f90.so.1: cannot open >>> shared object file: No such file or directory >>> ./a.out: error while loading shared libraries: libmpi_f90.so.1: cannot open >>> shared object file: No such file or directory >>> ./a.out: error while loading shared libraries: libmpi_f90.so.1: cannot open >>> shared object file: No such file or directory >>> -------------------------------------------------------------------------- >>> mpiexec noticed that the job aborted, but has no info as to the process >>> that caused that situation. >>> -------------------------------------------------------------------------- >>> >>> ls -l /usr/lib/openmpi/lib/ >>> total 6788 >>> lrwxrwxrwx. 1 root root 25 Sep 15 12:25 libmca_common_sm.so -> >>> libmca_common_sm.so.2.0.0 >>> lrwxrwxrwx. 1 root root 25 Sep 14 16:14 libmca_common_sm.so.2 -> >>> libmca_common_sm.so.2.0.0 >>> -rwxr-xr-x. 1 root root 8492 Jan 20 2012 libmca_common_sm.so.2.0.0 >>> lrwxrwxrwx. 1 root root 19 Sep 15 12:25 libmpi_cxx.so -> >>> libmpi_cxx.so.1.0.1 >>> lrwxrwxrwx. 1 root root 19 Sep 14 16:14 libmpi_cxx.so.1 -> >>> libmpi_cxx.so.1.0.1 >>> -rwxr-xr-x. 1 root root 87604 Jan 20 2012 libmpi_cxx.so.1.0.1 >>> lrwxrwxrwx. 1 root root 19 Sep 15 12:25 libmpi_f77.so -> >>> libmpi_f77.so.1.0.2 >>> lrwxrwxrwx. 1 root root 19 Sep 14 16:14 libmpi_f77.so.1 -> >>> libmpi_f77.so.1.0.2 >>> -rwxr-xr-x. 1 root root 179912 Jan 20 2012 libmpi_f77.so.1.0.2 >>> lrwxrwxrwx. 1 root root 19 Sep 15 12:25 libmpi_f90.so -> >>> libmpi_f90.so.1.1.0 >>> lrwxrwxrwx. 1 root root 19 Sep 14 16:14 libmpi_f90.so.1 -> >>> libmpi_f90.so.1.1.0 >>> -rwxr-xr-x. 1 root root 10364 Jan 20 2012 libmpi_f90.so.1.1.0 >>> lrwxrwxrwx. 1 root root 15 Sep 15 12:25 libmpi.so -> libmpi.so.1.0.2 >>> lrwxrwxrwx. 1 root root 15 Sep 14 16:14 libmpi.so.1 -> libmpi.so.1.0.2 >>> -rwxr-xr-x. 1 root root 1383444 Jan 20 2012 libmpi.so.1.0.2 >>> lrwxrwxrwx. 1 root root 21 Sep 15 12:25 libompitrace.so -> >>> libompitrace.so.0.0.0 >>> lrwxrwxrwx. 1 root root 21 Sep 14 16:14 libompitrace.so.0 -> >>> libompitrace.so.0.0.0 >>> -rwxr-xr-x. 1 root root 13572 Jan 20 2012 libompitrace.so.0.0.0 >>> lrwxrwxrwx. 1 root root 20 Sep 15 12:25 libopen-pal.so -> >>> libopen-pal.so.3.0.0 >>> lrwxrwxrwx. 1 root root 20 Sep 14 16:14 libopen-pal.so.3 -> >>> libopen-pal.so.3.0.0 >>> -rwxr-xr-x. 1 root root 386324 Jan 20 2012 libopen-pal.so.3.0.0 >>> lrwxrwxrwx. 1 root root 20 Sep 15 12:25 libopen-rte.so -> >>> libopen-rte.so.3.0.0 >>> lrwxrwxrwx. 1 root root 20 Sep 14 16:14 libopen-rte.so.3 -> >>> libopen-rte.so.3.0.0 >>> -rwxr-xr-x. 1 root root 790052 Jan 20 2012 libopen-rte.so.3.0.0 >>> -rw-r--r--. 1 root root 301520 Jan 20 2012 libotf.a >>> lrwxrwxrwx. 1 root root 15 Sep 15 12:25 libotf.so -> libotf.so.0.0.1 >>> lrwxrwxrwx. 1 root root 15 Sep 14 16:14 libotf.so.0 -> libotf.so.0.0.1 >>> -rwxr-xr-x. 1 root root 206384 Jan 20 2012 libotf.so.0.0.1 >>> -rw-r--r--. 1 root root 337970 Jan 20 2012 libvt.a >>> -rw-r--r--. 1 root root 591070 Jan 20 2012 libvt-hyb.a >>> lrwxrwxrwx. 1 root root 18 Sep 15 12:25 libvt-hyb.so -> >>> libvt-hyb.so.0.0.0 >>> lrwxrwxrwx. 1 root root 18 Sep 14 16:14 libvt-hyb.so.0 -> >>> libvt-hyb.so.0.0.0 >>> -rwxr-xr-x. 1 root root 428844 Jan 20 2012 libvt-hyb.so.0.0.0 >>> -rw-r--r--. 1 root root 541004 Jan 20 2012 libvt-mpi.a >>> lrwxrwxrwx. 1 root root 18 Sep 15 12:25 libvt-mpi.so -> >>> libvt-mpi.so.0.0.0 >>> lrwxrwxrwx. 1 root root 18 Sep 14 16:14 libvt-mpi.so.0 -> >>> libvt-mpi.so.0.0.0 >>> -rwxr-xr-x. 1 root root 396352 Jan 20 2012 libvt-mpi.so.0.0.0 >>> -rw-r--r--. 1 root root 372352 Jan 20 2012 libvt-mt.a >>> lrwxrwxrwx. 1 root root 17 Sep 15 12:25 libvt-mt.so -> >>> libvt-mt.so.0.0.0 >>> lrwxrwxrwx. 1 root root 17 Sep 14 16:14 libvt-mt.so.0 -> >>> libvt-mt.so.0.0.0 >>> -rwxr-xr-x. 1 root root 266104 Jan 20 2012 libvt-mt.so.0.0.0 >>> -rw-r--r--. 1 root root 60390 Jan 20 2012 libvt-pomp.a >>> lrwxrwxrwx. 1 root root 14 Sep 15 12:25 libvt.so -> libvt.so.0.0.0 >>> lrwxrwxrwx. 1 root root 14 Sep 14 16:14 libvt.so.0 -> libvt.so.0.0.0 >>> -rwxr-xr-x. 1 root root 242604 Jan 20 2012 libvt.so.0.0.0 >>> -rwxr-xr-x. 1 root root 303591 Jan 20 2012 mpi.mod >>> drwxr-xr-x. 2 root root 4096 Sep 14 16:14 openmpi >>> >>> >>> The file (actually, a link) it claims it can't find: libmpi_f90.so.1, is >>> clearly there. And LD_LIBRARY_PATH=/usr/lib/openmpi/lib/. >>> >>> What's the problem? >>> >>> ---John >>> _______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
