Those are related to the GM/MX component that are built within OpenMPI. Actually, I used the --with-mx=PATH_TO_MX_INSTALL_DIRECTORY option while configuring OpenMPI and the mx btl and mtl were properly built. It seems that OpenMPI wrongly tries to check for/use the gm module (which is of no use here as I'm using the mx2g myrinet libraries) upon startup instead of only probing the mx modules.
I don't think that those problems are somehow related to the allocation issue. Regards, Eloi -----Original Message----- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Reuti Sent: vendredi 20 avril 2012 15:20 To: Open MPI Users Subject: Re: [OMPI users] sge tight integration leads to bad allocation Am 20.04.2012 um 15:04 schrieb Eloi Gaudry: > > Hi Ralph, Reuti, > > I've just observed the same issue without specifying -np. > Please find attached the ps -elfax output from the computing nodes and some > sge related information. What about these error message: component_find: unable to open /opt/openmpi-1.4.4/lib/openmpi/mca_btl_gm: perhaps a missing symbol, or compiled for a different version of Open MPI? (ignored) [charlie:23188] mca: base: -- Reuti > > Regards, > Eloi > > > > -----Original message----- > From: Ralph Castain <r...@open-mpi.org> > Sent: Wed 04-11-2012 02:25 pm > Subject: Re: [OMPI users] sge tight integration leads to bad allocation > To: Open MPI Users <us...@open-mpi.org>; > > On Apr 11, 2012, at 6:20 AM, Reuti wrote: > > > Am 11.04.2012 um 04:26 schrieb Ralph Castain: > > > >> Hi Reuti > >> > >> Can you replicate this problem on your machine? Can you try it with 1.5? > > > > No. It's also working fine in 1.5.5 in some tests. I even forced an uneven > > distribution by limiting the slots setting for some machines in the queue > > configuration. > > Thanks - that confirms what I've been able to test. It sounds like it is > something in Eloi's setup, but I can't fathom what it would be - the > allocations all look acceptable. > > I'm stumped. :-( > <job1882.log><job1882.sh><pselfax.carl><pselfax.charlie><qstat-gt><qst > at-j1882>_______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users _______________________________________________ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users
