Hello Gus, Ralph, Jeff a very late answer for this - just found it in my mailbox.
Would "cp -rp" help? (To preserve time stamps, instead of "cp -r".)
Yes, the root of the evil were the time stamps. 'cp -a' is the magic wand. Many thanks for your help, and I should wear sackcloth and ashes... :-/
Best, Paul
Anyway, since 1.2.8 here I build 5, sometimes more versions, all from the same tarball, but on separate build directories, as Jeff suggests. [VPATH] Works for me. My two cents. Gus Correa Jeff Squyres wrote:Ah -- Ralph pointed out the relevant line to me in your first mail that I initially missed:In each case I build 16 versions at all (4 compiler * 32bit/64bit *support for multithreading ON/OFF). The same error arise in all 16 versions.Perhaps you should just expand the tarball once and then do VPATH builds...?Something like this: tar xf openmpi-1.5.3.tar.bz2 cd openmpi-1.5.3 mkdir build-gcc cd build-gcc ../configure ........blah.......... make -j 4 make install cd .. mkdir build-icc ../configure CC=icc CXX=icpc FC=ifort F77=ifort ......blah..... make -j 4 make install cd .. ....etc.This allows you to have one set of source and have N different builds from it. Open MPI uses the GNU Autotools correctly to support this kind of build pattern.On Jul 22, 2011, at 2:37 PM, Jeff Squyres wrote:Your RUNME script is a *very* strange way to build Open MPI. It starts with a massive copy:cp -r /home/pk224850/OpenMPI/openmpi-1.5.3/AUTHORS /home/pk224850/OpenMPI/openmpi-1.5.3/CMakeLists.txt <...much snipped...> .Why are you doing this kind of copy? I suspect that the GNU autotools' timestamps are getting all out of whack when you do this kind of copy, and therefore when you run "configure", it tries to re-autogen itself.To be clear: when you expand OMPI from a tarball, you shouldn't need the GNU Autotools installed at all -- the tarball is pre-bootstrapped exactly to avoid you needing to use the Autotools (much less any specific version of the Autotools).I suspect that if you do this: ----- tar xf openmpi-1.5.3.tar.bz2 cd openmpi-1.5.3 ./configure ....etc. ----- everything will work just fine. On Jul 22, 2011, at 11:12 AM, Paul Kapinos wrote:Dear OpenMPI volks, currently I have a problem by building the version 1.5.3 of OpenMPI on Scientific Linux 6.0 systems, which seem vor me to be a configuration problem. After the configure run (which seem to terminate without error code), the "gmake all" stage produces errors and exits. Typical is the output below. Fancy: the 1.4.3 version on same computer can be build with no special trouble. Both the 1.4.3 and 1.5.3 versions can be build on other computer running CentOS 5.6. In each case I build 16 versions at all (4 compiler * 32bit/64bit *support for multithreading ON/OFF). The same error arise in all 16 versions.Can someone give a hint about how to avoid this issue? Thanks! Best wishes, Paul Some logs and configure are downloadable here: https://gigamove.rz.rwth-aachen.de/d/id/2jM6MEa2nveJJD The configure line is in RUNME.sh, the logs of configure and build stage in log_* files; I also attached theconfig.log file and the configure itself (which is the standard from the1.5.3 release). ###################################################################### CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /tmp/pk224850/linuxc2_11254/openmpi-1.5.3mt_linux64_gcc/config/missing --run aclocal-1.11 -I config sh: config/ompi_get_version.sh: No such file or directory /usr/bin/m4: esyscmd subprocess failed <last message repeated 12x> configure.ac:953: warning: OMPI_CONFIGURE_SETUP is m4_require'd but not m4_defun'd config/ompi_mca.m4:37: OMPI_MCA is expanded from... configure.ac:953: the top level configure.ac:953: warning: AC_COMPILE_IFELSE was called before AC_USE_SYSTEM_EXTENSIONS../../lib/autoconf/specific.m4:386: AC_USE_SYSTEM_EXTENSIONS is expandedfrom... opal/mca/paffinity/hwloc/hwloc/config/hwloc.m4:152: HWLOC_SETUP_CORE_AFTER_C99 is expanded from... ../../lib/m4sugar/m4sh.m4:505: AS_IF is expanded from... opal/mca/paffinity/hwloc/hwloc/config/hwloc.m4:22: HWLOC_SETUP_CORE is expanded from... opal/mca/paffinity/hwloc/configure.m4:40: MCA_paffinity_hwloc_CONFIG is expanded from... config/ompi_mca.m4:540: MCA_CONFIGURE_M4_CONFIG_COMPONENT is expanded from... config/ompi_mca.m4:326: MCA_CONFIGURE_FRAMEWORK is expanded from... config/ompi_mca.m4:247: MCA_CONFIGURE_PROJECT is expanded from... configure.ac:953: warning: AC_RUN_IFELSE was called before AC_USE_SYSTEM_EXTENSIONS -- Dipl.-Inform. Paul Kapinos - High Performance Computing, RWTH Aachen University, Center for Computing and Communication Seffenter Weg 23, D 52074 Aachen (Germany) Tel: +49 241/80-24915 _______________________________________________ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users-- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/ _______________________________________________ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users_______________________________________________ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users
-- Dipl.-Inform. Paul Kapinos - High Performance Computing, RWTH Aachen University, Center for Computing and Communication Seffenter Weg 23, D 52074 Aachen (Germany) Tel: +49 241/80-24915
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