Ah -- Ralph pointed out the relevant line to me in your first mail that I initially missed:
> In each case I build 16 versions at all (4 compiler * 32bit/64bit * > support for multithreading ON/OFF). The same error arise in all 16 versions. Perhaps you should just expand the tarball once and then do VPATH builds...? Something like this: tar xf openmpi-1.5.3.tar.bz2 cd openmpi-1.5.3 mkdir build-gcc cd build-gcc ../configure ........blah.......... make -j 4 make install cd .. mkdir build-icc ../configure CC=icc CXX=icpc FC=ifort F77=ifort ......blah..... make -j 4 make install cd .. ....etc. This allows you to have one set of source and have N different builds from it. Open MPI uses the GNU Autotools correctly to support this kind of build pattern. On Jul 22, 2011, at 2:37 PM, Jeff Squyres wrote: > Your RUNME script is a *very* strange way to build Open MPI. It starts with > a massive copy: > > cp -r /home/pk224850/OpenMPI/openmpi-1.5.3/AUTHORS > /home/pk224850/OpenMPI/openmpi-1.5.3/CMakeLists.txt <...much snipped...> . > > Why are you doing this kind of copy? I suspect that the GNU autotools' > timestamps are getting all out of whack when you do this kind of copy, and > therefore when you run "configure", it tries to re-autogen itself. > > To be clear: when you expand OMPI from a tarball, you shouldn't need the GNU > Autotools installed at all -- the tarball is pre-bootstrapped exactly to > avoid you needing to use the Autotools (much less any specific version of the > Autotools). > > I suspect that if you do this: > > ----- > tar xf openmpi-1.5.3.tar.bz2 > cd openmpi-1.5.3 > ./configure ....etc. > ----- > > everything will work just fine. > > > On Jul 22, 2011, at 11:12 AM, Paul Kapinos wrote: > >> Dear OpenMPI volks, >> currently I have a problem by building the version 1.5.3 of OpenMPI on >> Scientific Linux 6.0 systems, which seem vor me to be a configuration >> problem. >> >> After the configure run (which seem to terminate without error code), >> the "gmake all" stage produces errors and exits. >> >> Typical is the output below. >> >> Fancy: the 1.4.3 version on same computer can be build with no special >> trouble. Both the 1.4.3 and 1.5.3 versions can be build on other >> computer running CentOS 5.6. >> >> In each case I build 16 versions at all (4 compiler * 32bit/64bit * >> support for multithreading ON/OFF). The same error arise in all 16 versions. >> >> Can someone give a hint about how to avoid this issue? Thanks! >> >> Best wishes, >> >> Paul >> >> >> Some logs and configure are downloadable here: >> https://gigamove.rz.rwth-aachen.de/d/id/2jM6MEa2nveJJD >> >> The configure line is in RUNME.sh, the >> logs of configure and build stage in log_* files; I also attached the >> config.log file and the configure itself (which is the standard from the >> 1.5.3 release). >> >> >> ###################################################################### >> >> >> CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh >> /tmp/pk224850/linuxc2_11254/openmpi-1.5.3mt_linux64_gcc/config/missing >> --run aclocal-1.11 -I config >> sh: config/ompi_get_version.sh: No such file or directory >> /usr/bin/m4: esyscmd subprocess failed >> >> <last message repeated 12x> >> >> configure.ac:953: warning: OMPI_CONFIGURE_SETUP is m4_require'd but not >> m4_defun'd >> config/ompi_mca.m4:37: OMPI_MCA is expanded from... >> configure.ac:953: the top level >> configure.ac:953: warning: AC_COMPILE_IFELSE was called before >> AC_USE_SYSTEM_EXTENSIONS >> ../../lib/autoconf/specific.m4:386: AC_USE_SYSTEM_EXTENSIONS is expanded >> from... >> opal/mca/paffinity/hwloc/hwloc/config/hwloc.m4:152: >> HWLOC_SETUP_CORE_AFTER_C99 is expanded from... >> ../../lib/m4sugar/m4sh.m4:505: AS_IF is expanded from... >> opal/mca/paffinity/hwloc/hwloc/config/hwloc.m4:22: HWLOC_SETUP_CORE is >> expanded from... >> opal/mca/paffinity/hwloc/configure.m4:40: MCA_paffinity_hwloc_CONFIG is >> expanded from... >> config/ompi_mca.m4:540: MCA_CONFIGURE_M4_CONFIG_COMPONENT is expanded >> from... >> config/ompi_mca.m4:326: MCA_CONFIGURE_FRAMEWORK is expanded from... >> config/ompi_mca.m4:247: MCA_CONFIGURE_PROJECT is expanded from... >> configure.ac:953: warning: AC_RUN_IFELSE was called before >> AC_USE_SYSTEM_EXTENSIONS >> >> >> >> >> -- >> Dipl.-Inform. Paul Kapinos - High Performance Computing, >> RWTH Aachen University, Center for Computing and Communication >> Seffenter Weg 23, D 52074 Aachen (Germany) >> Tel: +49 241/80-24915 >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
