It seems to be a configure behavior, but I don't understand enough
to figure it out. Perhaps you can advise me.
Key differences that I noted were:
(1) in config.log, the configure command that gets rerun appears to
add some arguments in the bad build:
Bad build includes the underlined 3 options at the end below:
$ ./configure --prefix=/release/cfd/openmpi-pgi --without-tm --
without-sge --without-lsf --without-psm --without-portals --without-
gm --without-elan --without-slurm --without-loadleveler --enable-
mpirun-prefix-by-default --enable-contrib-no-build=vt --enable-mca-
no-build=maffinity --disable-per-user-config-files --disable-io-
romio --enable-static --disable-shared --with-wrapper-cflags=-
Msignextend --with-wrapper-cxxflags=-Msignextend CXX=/appserv/pgi/
linux86-64/10.9/bin/pgCC CC=/appserv/pgi/linux86-64/10.9/bin/pgcc
CFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend
CXXFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend F77=/
appserv/pgi/linux86-64/10.9/bin/pgf95 FFLAGS=-D_GNU_SOURCE -O2 -
Mcache_align -Minfo -Munixlogical FC=/appserv/pgi/linux86-64/10.9/
bin/pgf95 FCFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -
Munixlogical LDFLAGS= -Bstatic_pgi --enable-ltdl-convenience --no-
create --no-recursion
Good build:
$ ./configure --prefix=/release/cfd/openmpi-pgi --without-tm --
without-sge --without-lsf --without-psm --without-portals --without-
gm --without-elan --without-slurm --without-loadleveler --enable-
mpirun-prefix-by-default --enable-contrib-no-build=vt --enable-mca-
no-build=maffinity --disable-per-user-config-files --disable-io-
romio --enable-static --disable-shared --with-wrapper-cflags=-
Msignextend --with-wrapper-cxxflags=-Msignextend CXX=/appserv/pgi/
linux86-64/10.9/bin/pgCC CC=/appserv/pgi/linux86-64/10.9/bin/pgcc
CFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend
CXXFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend F77=/
appserv/pgi/linux86-64/10.9/bin/pgf95 FFLAGS=-D_GNU_SOURCE -O2 -
Mcache_align -Minfo -Munixlogical FC=/appserv/pgi/linux86-64/10.9/
bin/pgf95 FCFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -
Munixlogical LDFLAGS= -Bstatic_pgi
(2) in configure itself, the version number is missing in the bad
build:
Bad build:
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.63 for Open MPI .
Good build:
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.63 for Open MPI 1.4.3.
#
(3) also in configure, the good build has picked up availability of
pgfortran but the bad one does not:
- Bad build: for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32
af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort
ifc efc pgf95 lf95 ftn
- Good build: for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32
af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort
ifc efcpgfortran pgf95 lf95 ftn
If you have any idea what could cause these differences, I’m all
ears…
Thanks
Ed
-----Original Message-----
From: users-boun...@open-mpi.org [mailto:users-bounces@open-
mpi.org] On Behalf Of Jeff Squyres
Sent: Saturday, September 24, 2011 8:23 AM
To: Open MPI Users
Subject: EXTERNAL: Re: [OMPI users] Trouble compiling 1.4.3 with
PGI 10.9 compilers
Just out of curiosity, does Open MPI 1.5.4 build properly?
We've seen problems with the PGI compiler suite before -- it *does*
look like a problem with libtool-building issues; e.g., a switch is
too old or is missing or something. Meaning: it looks like PGI
thinks it's trying to build an application, not a library. This is
usually bit rot in libtool (i.e., PGI may have changed their
options, but we're using an older Libtool in the 1.4.x series that
doesn't know about this option).
I do note that we fixed some libtool issues in the 1.4.4 tarball;
could you try the 1.4.4rc and see if that fixes the issue? If not,
we might have missed some patches to bring over to the v1.4 branch.
http://www.open-mpi.org/software/ompi/v1.4/
On Sep 20, 2011, at 1:16 PM, Blosch, Edwin L wrote:
I'm having trouble building 1.4.3 using PGI 10.9. I searched the
list archives briefly but I didn't stumble across anything that
looked like the same problem, so I thought I'd ask if an expert
might recognize the nature of the problem here.
The configure command:
./configure --prefix=/release/openmpi-pgi --without-tm --without-
sge --enable-mpirun-prefix-by-default --enable-contrib-no-build=vt
--enable-mca-no-build=maffinity --disable-per-user-config-files --
disable-io-romio --with-mpi-f90-size=small --enable-static --
disable-shared --with-wrapper-cflags=-Msignextend --with-wrapper-
cxxflags=-Msignextend CXX=/appserv/pgi/linux86-64/10.9/bin/pgCC
CC=/appserv/pgi/linux86-64/10.9/bin/pgcc 'CFLAGS= -O2 -
Mcache_align -Minfo -Msignextend -Msignextend' 'CXXFLAGS= -O2 -
Mcache_align -Minfo -Msignextend -Msignextend' F77=/appserv/pgi/
linux86-64/10.9/bin/pgf95 'FFLAGS=-D_GNU_SOURCE -O2 -Mcache_align
-Minfo -Munixlogical' FC=/appserv/pgi/linux86-64/10.9/bin/pgf95
'FCFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -Munixlogical'
'LDFLAGS= -Bstatic_pgi'
The place where the build eventually dies:
/bin/sh ../../../libtool --tag=CXX --mode=link /appserv/pgi/
linux86-64/10.9/bin/pgCC -DNDEBUG -O2 -Mcache_align -Minfo -
Msignextend -Msignextend -version-info 0:1:0 -export-dynamic -
Bstatic_pgi -o libmpi_cxx.la -rpath /release/cfd/openmpi-pgi/lib
mpicxx.lo intercepts.lo comm.lo datatype.lo win.lo
file.lo ../../../ompi/libmpi.la -lnsl -lutil -lpthread
libtool: link: tpldir=Template.dir
libtool: link: rm -rf Template.dir
libtool: link: /appserv/pgi/linux86-64/10.9/bin/pgCC --
prelink_objects --instantiation_dir Template.dir mpicxx.o
intercepts.o comm.o datatype.o win.o file.o
pgCC-Warning-prelink_objects switch is deprecated
pgCC-Warning-instantiation_dir switch is deprecated
/usr/lib64/crt1.o: In function `_start':
/usr/src/packages/BUILD/glibc-2.9/csu/../sysdeps/x86_64/elf/
start.S:109: undefined reference to `main'
mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec':
(.text+0x49): undefined reference to `ompi_mpi_errors_are_fatal'
mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec':
(.text+0x62): undefined reference to `ompi_mpi_errors_return'
mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec':
(.text+0x7b): undefined reference to
`ompi_mpi_errors_throw_exceptions'
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Jeff Squyres
jsquy...@cisco.com
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