Hi Ralph, Its a no-go with the --enable-mpirun-prefix-by-default.
Version issue: The program I am trying to run (RAY: http://sourceforge.net/apps/mediawiki/denovoassembler/index.php?title=Main_Page#Installation ) will not work with earlier versions of OpenMPI- this is confirmed both by the author and by my observations.. Any other suggestions? On Mon, Apr 26, 2010 at 08:48, Ralph Castain <r...@open-mpi.org> wrote: > When configuring OMPI. Your configure should look like this: > > ./configure --prefix=<wherever> --enable-mpirun-prefix-by-default ..... > > Just curious: what convinces you that you have a version mismatch? > Connectivity failures can occur for a variety of reasons - this looks more > like you have some kind of network access issue. > > On Apr 26, 2010, at 9:39 AM, Matthew MacManes wrote: > > Hi Ralph, > > Thanks! Do you mean to pass '--enable-mpirun-prefix-by-default' when > configuring OpenMPI, or when configuring the program I am trying to use. > Sorry if this should be obvious! > > On Mon, Apr 26, 2010 at 08:13, Ralph Castain <r...@open-mpi.org> wrote: > >> First, is the directory where you installed OMPI 1.4.1 visible to all the >> nodes? If not, then this won't work. >> >> If it is, then try configuring with --enable-mpirun-prefix-by-default, and >> be sure you specify a prefix that points to your installation. >> >> >> On Apr 26, 2010, at 9:08 AM, Matthew MacManes wrote: >> >> I am using SGE to submit jobs to one of the TeraGrid sites, specifically >> TACC-RANGER. The problem, is, that I am using a program that requires >> OpenMPI version 1.4.1, and the latest install on RANGER is 1.3.1. I was told >> that I could install OpenMPI in my home directory, and run jobs using my >> newer version.. However, I am having problems doing this, getting the error >> message seen below. >> >> Its seems that the compute nodes are not accessing all the sufficient >> libraries for the newer version of OpenMPI. >> >> Can anybody tell me what I can do to get the jobs running using the newer >> version of OpenMPI. Thanks! >> >> TACC: Setting memory limits for job 1349843 to 3984588 KB >> TACC: Dumping job script: >> ------------------------------ >> -------------------------------------------------- >> #!/bin/bash >> export TMPDIR=$SCRATCH/abyss_tmp/ >> LD_LIBRARY_PATH=/work/01301/mmacmane >> LD_LIBRARY_PATH=/work/01301/mmacmane/bin >> LD_LIBRARY_PATH=/work/01301/mmacmane/include >> LD_LIBRARY_PATH=/work/01301/mmacmane/etc >> LD_LIBRARY_PATH=/work/01301/mmacmane/lib >> LD_LIBRARY_PATH=/work/01301/mmacmane/openmpi-1.4.1 >> cd /work/01301/mmacmane/Ray-0.0.6 >> module load openmpi >> #$ -N testing_MRNA2 >> #$ -j y >> #$ -o /work/01301/mmacmane/Ray-0.0.6/testing_MRNA2 >> #$ -pe 8way 128 >> #$ -q normal >> #$ -l h_rt=2:00:00 >> #$ -M macma...@gmail.com >> #$ -m be >> #$ -cwd >> #$ -V >> /work/01301/mmacmane/bin/mpirun Ray >> /work/01301/mmacmane/Ray-0.0.6/Ray_snp.txt-------------------------------------------------------------------------------- >> TACC: Done. >> Module mvapich superceded >> >> Ray Copyright (C) 2010 Sébastien Boisvert, Jacques Corbeil, François >> Laviolette >> http://denovoassembler.sf.net/ >> This program comes with ABSOLUTELY NO WARRANTY. >> This is free software, and you are welcome to redistribute it >> under certain conditions; see "gpl-3.0.txt" for details. >> [i180-212.ranger.tacc.utexas.edu][[29053,1],114][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],119][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],123][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],17][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],42][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> [i128-412.ranger.tacc.utexas.edu][[29053,1],44][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],1][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],13][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],9][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],104][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],106][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],102][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],45][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> connect() to 192.168.4.244 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],83][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],84][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],92][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],66][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],70][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],52][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],60][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],58][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],72][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],23][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],29][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],31][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],35][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],43][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],0][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],6][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],14][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],73][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> [i105-104.ranger.tacc.utexas.edu][[29053,1],77][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],75][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],99][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> [i156-212.ranger.tacc.utexas.edu][[29053,1],109][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],103][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> connect() to 192.168.16.232 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],51][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],55][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],57][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],113][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],116][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],115][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],19][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],21][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],27][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],37][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],47][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],33][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],8][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],10][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],4][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],97][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],101][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],107][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],82][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],85][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],90][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],79][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],65][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],67][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],61][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],53][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],59][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],127][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],121][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],124][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],18][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],25][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],28][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],39][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],34][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],38][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],3][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],2][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],12][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],105][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],108][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],111][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],91][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],80][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],87][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],69][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],68][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],71][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],63][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> [i116-312.ranger.tacc.utexas.edu][[29053,1],48][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],49][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> connect() to 192.168.7.64 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],16][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],24][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],26][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],125][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],122][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],126][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],40][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],41][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],46][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],15][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],7][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],11][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],100][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],110][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],96][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],88][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],89][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],94][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],76][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],64][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],78][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],62][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],50][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> [i116-312.ranger.tacc.utexas.edu][[29053,1],56][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> connect() to 192.168.7.64 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],20][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> [i161-311.ranger.tacc.utexas.edu][[29053,1],22][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> [i161-311.ranger.tacc.utexas.edu][[29053,1],30][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.5.170 failed: No route to host (113) >> connect() to 192.168.5.170 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],118][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],112][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],117][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],32][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i128-412.ranger.tacc.utexas.edu][[29053,1],36][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.4.244 failed: No route to host (113) >> [i120-302.ranger.tacc.utexas.edu][[29053,1],5][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.13.99 failed: No route to host (113) >> [i156-212.ranger.tacc.utexas.edu][[29053,1],98][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.16.232 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],86][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],95][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],93][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: No route to host (113) >> [i105-104.ranger.tacc.utexas.edu][[29053,1],74][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.15.0 failed: No route to host (113) >> [i116-312.ranger.tacc.utexas.edu][[29053,1],54][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.7.64 failed: No route to host (113) >> [i180-212.ranger.tacc.utexas.edu][[29053,1],120][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.12.104 failed: Connection timed out (110) >> [i170-204.ranger.tacc.utexas.edu][[29053,1],81][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] >> connect() to 192.168.2.196 failed: Connection timed out (110) >> -------------------------------------------------------------------------- >> A daemon (pid 24537) died unexpectedly with status 137 while attempting >> to launch so we are aborting. >> >> There may be more information reported by the environment (see above). >> >> This may be because the daemon was unable to find all the needed shared >> libraries on the remote node. You may set your LD_LIBRARY_PATH to have the >> location of the shared libraries on the remote nodes and this will >> automatically be forwarded to the remote nodes. >> ------------------------------ >> -------------------------------------------- >> -------------------------------------------------------------------------- >> mpirun noticed that the job aborted, but has no info as to the process >> that caused that situation. >> -------------------------------------------------------------------------- >> [i120-302.ranger.tacc.utexas.edu:24530] [[29053,0],0]-[[29053,0],4] >> mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104) >> -------------------------------------------------------------------------- >> mpirun was unable to cleanly terminate the daemons on the nodes shown >> below. Additional manual cleanup may be required - please refer to >> the "orte-clean" tool for assistance. >> -------------------------------------------------------------------------- >> i128-412.ranger.tacc.utexas.edu >> i105-104.ranger.tacc.utexas.edu >> i170-204.ranger.tacc.utexas.edu >> [i161-311.ranger.tacc.utexas.edu:28177] [[29053,0],1] routed:binomial: >> Connection to lifeline [[29053,0],0] lost >> [i156-212.ranger.tacc.utexas.edu:16331] [[29053,0],6] routed:binomial: >> Connection to lifeline [[29053,0],0] lost >> [i180-212.ranger.tacc.utexas.edu:09688] [[29053,0],7] routed:binomial: >> Connection to lifeline [[29053,0],0] lost >> TACC: Cleaning up after job: 1349843 >> TACC: Done. >> _________________________________ >> Matthew MacManes >> PhD Candidate >> University of California- Berkeley >> Museum of Vertebrate Zoology >> Phone: 510-495-5833 >> Lab Website: http://ib.berkeley.edu/labs/lacey >> Personal Website: http://macmanes.com/ >> >> >
