Hello Matthew, Not sure it it helps but I am guessing that
module load openmpi (in bash script) is updating variables to RANGER openmpi installation. Try removing this line in your script file and resubmit your job, also #$ -V in the submission script exports env variables from your current terminal. Check if you have the correct setting before your submit your job. Rangam ________________________________________ From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] On Behalf Of Matthew MacManes [macma...@gmail.com] Sent: Monday, April 26, 2010 10:08 AM To: Open Users Subject: [OMPI users] problem using new OMPI1.4.1 vie SGE I am using SGE to submit jobs to one of the TeraGrid sites, specifically TACC-RANGER. The problem, is, that I am using a program that requires OpenMPI version 1.4.1, and the latest install on RANGER is 1.3.1. I was told that I could install OpenMPI in my home directory, and run jobs using my newer version.. However, I am having problems doing this, getting the error message seen below. Its seems that the compute nodes are not accessing all the sufficient libraries for the newer version of OpenMPI. Can anybody tell me what I can do to get the jobs running using the newer version of OpenMPI. Thanks! TACC: Setting memory limits for job 1349843 to 3984588 KB TACC: Dumping job script: -------------------------------------------------------------------------------- #!/bin/bash export TMPDIR=$SCRATCH/abyss_tmp/ LD_LIBRARY_PATH=/work/01301/mmacmane LD_LIBRARY_PATH=/work/01301/mmacmane/bin LD_LIBRARY_PATH=/work/01301/mmacmane/include LD_LIBRARY_PATH=/work/01301/mmacmane/etc LD_LIBRARY_PATH=/work/01301/mmacmane/lib LD_LIBRARY_PATH=/work/01301/mmacmane/openmpi-1.4.1 cd /work/01301/mmacmane/Ray-0.0.6 module load openmpi #$ -N testing_MRNA2 #$ -j y #$ -o /work/01301/mmacmane/Ray-0.0.6/testing_MRNA2 #$ -pe 8way 128 #$ -q normal #$ -l h_rt=2:00:00 #$ -M macma...@gmail.com<mailto:macma...@gmail.com> #$ -m be #$ -cwd #$ -V /work/01301/mmacmane/bin/mpirun Ray /work/01301/mmacmane/Ray-0.0.6/Ray_snp.txt-------------------------------------------------------------------------------- TACC: Done. Module mvapich superceded Ray Copyright (C) 2010 Sébastien Boisvert, Jacques Corbeil, François Laviolette http://denovoassembler.sf.net/ This program comes with ABSOLUTELY NO WARRANTY. This is free software, and you are welcome to redistribute it under certain conditions; see "gpl-3.0.txt" for details. [i180-212.ranger.tacc.utexas.edu][[29053,1],114][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],119][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],123][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],17][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],42][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] [i128-412.ranger.tacc.utexas.edu][[29053,1],44][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],1][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],13][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],9][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],104][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],106][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],102][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],45][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) connect() to 192.168.4.244 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],83][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],84][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],92][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],66][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],70][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],52][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],60][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],58][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],72][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],23][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],29][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],31][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],35][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],43][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],0][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],6][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],14][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],73][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] [i105-104.ranger.tacc.utexas.edu][[29053,1],77][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],75][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],99][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] [i156-212.ranger.tacc.utexas.edu][[29053,1],109][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],103][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) connect() to 192.168.16.232 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],51][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],55][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],57][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],113][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],116][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],115][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],19][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],21][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],27][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],37][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],47][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],33][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],8][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],10][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],4][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],97][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],101][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],107][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],82][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],85][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],90][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],79][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],65][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],67][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],61][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],53][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],59][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],127][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],121][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],124][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],18][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],25][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],28][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],39][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],34][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],38][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],3][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],2][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],12][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],105][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],108][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],111][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],91][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],80][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],87][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],69][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],68][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],71][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],63][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] [i116-312.ranger.tacc.utexas.edu][[29053,1],48][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],49][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) connect() to 192.168.7.64 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],16][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],24][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],26][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],125][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],122][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],126][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],40][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],41][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],46][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],15][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],7][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],11][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],100][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],110][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],96][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],88][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],89][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],94][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],76][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],64][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],78][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],62][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],50][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] [i116-312.ranger.tacc.utexas.edu][[29053,1],56][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) connect() to 192.168.7.64 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],20][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) [i161-311.ranger.tacc.utexas.edu][[29053,1],22][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] [i161-311.ranger.tacc.utexas.edu][[29053,1],30][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.5.170 failed: No route to host (113) connect() to 192.168.5.170 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],118][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],112][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],117][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],32][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i128-412.ranger.tacc.utexas.edu][[29053,1],36][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.4.244 failed: No route to host (113) [i120-302.ranger.tacc.utexas.edu][[29053,1],5][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.13.99 failed: No route to host (113) [i156-212.ranger.tacc.utexas.edu][[29053,1],98][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.16.232 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],86][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],95][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i170-204.ranger.tacc.utexas.edu][[29053,1],93][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: No route to host (113) [i105-104.ranger.tacc.utexas.edu][[29053,1],74][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.15.0 failed: No route to host (113) [i116-312.ranger.tacc.utexas.edu][[29053,1],54][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.7.64 failed: No route to host (113) [i180-212.ranger.tacc.utexas.edu][[29053,1],120][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.12.104 failed: Connection timed out (110) [i170-204.ranger.tacc.utexas.edu][[29053,1],81][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect] connect() to 192.168.2.196 failed: Connection timed out (110) -------------------------------------------------------------------------- A daemon (pid 24537) died unexpectedly with status 137 while attempting to launch so we are aborting. There may be more information reported by the environment (see above). This may be because the daemon was unable to find all the needed shared libraries on the remote node. You may set your LD_LIBRARY_PATH to have the location of the shared libraries on the remote nodes and this will automatically be forwarded to the remote nodes. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun noticed that the job aborted, but has no info as to the process that caused that situation. -------------------------------------------------------------------------- [i120-302.ranger.tacc.utexas.edu:24530] [[29053,0],0]-[[29053,0],4] mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104) -------------------------------------------------------------------------- mpirun was unable to cleanly terminate the daemons on the nodes shown below. Additional manual cleanup may be required - please refer to the "orte-clean" tool for assistance. -------------------------------------------------------------------------- i128-412.ranger.tacc.utexas.edu i105-104.ranger.tacc.utexas.edu i170-204.ranger.tacc.utexas.edu [i161-311.ranger.tacc.utexas.edu:28177] [[29053,0],1] routed:binomial: Connection to lifeline [[29053,0],0] lost [i156-212.ranger.tacc.utexas.edu:16331] [[29053,0],6] routed:binomial: Connection to lifeline [[29053,0],0] lost [i180-212.ranger.tacc.utexas.edu:09688] [[29053,0],7] routed:binomial: Connection to lifeline [[29053,0],0] lost TACC: Cleaning up after job: 1349843 TACC: Done. _________________________________ Matthew MacManes PhD Candidate University of California- Berkeley Museum of Vertebrate Zoology Phone: 510-495-5833 Lab Website: http://ib.berkeley.edu/labs/lacey Personal Website: http://macmanes.com/
