On 10-Aug-09, at 6:44 PM, Ralph Castain wrote:
Check your LD_LIBRARY_PATH - there is an earlier version of OMPI in
your path that is interfering with operation (i.e., it comes before
your 1.3.3 installation).
Hmmmm, The OS X faq says not to do this:
"Note that there is no need to add Open MPI's libdir to
LD_LIBRARY_PATH; Open MPI's shared library build process automatically
uses the "rpath" mechanism to automatically find the correct shared
libraries (i.e., the ones associated with this build, vs., for
example, the OS X-shipped OMPI shared libraries). Also note that we
specifically do not recommend adding Open MPI's libdir to
DYLD_LIBRARY_PATH."
http://www.open-mpi.org/faq/?category=osx
Regardless, if I set either, and run ompi_info I still get:
[saturna.cluster:94981] mca: base: component_find: iof "mca_iof_proxy"
uses an MCA interface that is not recognized (component MCA v1.0.0 !=
supported MCA v2.0.0) -- ignored
[saturna.cluster:94981] mca: base: component_find: iof "mca_iof_svc"
uses an MCA interface that is not recognized (component MCA v1.0.0 !=
supported MCA v2.0.0) -- ignored
echo $DYLD_LIBRARY_PATH $LD_LIBRARY_PATH
/usr/local/openmpi/lib: /usr/local/openmpi/lib:
So I'm afraid I'm stumped again. I suppose I could go clean out all
the libraries in /usr/lib/...
Thanks again, sorry to be a pain...
Cheers, Jody
On Aug 10, 2009, at 7:38 PM, Klymak Jody wrote:
So,
mpirun --display-allocation -pernode --display-map hostname
gives me the output below. Simple jobs seem to run, but the MITgcm
does not, either under ssh or torque. It hangs at some early point
in execution before anything is written, so its hard for me to tell
what the error is. Could these MCA warnings have anything to do
with it?
I've recompiled the gcm with -L /usr/local/openmpi/lib, so
hopefully that catches the right library.
Thanks, Jody
[xserve02.local:38126] mca: base: component_find: ras
"mca_ras_dash_host" uses an MCA interface that is not recogniz
ed (component MCA v1.0.0 != supported MCA v2.0.0) -- ignored
[xserve02.local:38126] mca: base: component_find: ras
"mca_ras_hostfile" uses an MCA interface that is not recognize
d (component MCA v1.0.0 != supported MCA v2.0.0) -- ignored
[xserve02.local:38126] mca: base: component_find: ras
"mca_ras_localhost" uses an MCA interface that is not recogniz
ed (component MCA v1.0.0 != supported MCA v2.0.0) -- ignored
[xserve02.local:38126] mca: base: component_find: ras
"mca_ras_xgrid" uses an MCA interface that is not recognized (
component MCA v1.0.0 != supported MCA v2.0.0) -- ignored
[xserve02.local:38126] mca: base: component_find: iof
"mca_iof_proxy" uses an MCA interface that is not recognized (
component MCA v1.0.0 != supported MCA v2.0.0) -- ignored
[xserve02.local:38126] mca: base: component_find: iof "mca_iof_svc"
uses an MCA interface that is not recognized (co
mponent MCA v1.0.0 != supported MCA v2.0.0) -- ignored
====================== ALLOCATED NODES ======================
Data for node: Name: xserve02.local Num slots: 8 Max slots: 0
Data for node: Name: xserve01.local Num slots: 8 Max slots: 0
=================================================================
======================== JOB MAP ========================
Data for node: Name: xserve02.local Num procs: 1
Process OMPI jobid: [20967,1] Process rank: 0
Data for node: Name: xserve01.local Num procs: 1
Process OMPI jobid: [20967,1] Process rank: 1
=============================================================
[xserve01.cluster:38518] mca: base: component_find: iof
"mca_iof_proxy" uses an MCA interface that is not recognized
(component MCA v1.0.0 != supported MCA v2.0.0) -- ignored
[xserve01.cluster:38518] mca: base: component_find: iof
"mca_iof_svc" uses an MCA interface that is not recognized (
component MCA v1.0.0 != supported MCA v2.0.0) -- ignored
xserve02.local
xserve01.cluster
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