Hi builtin, do I have to change them to ssh and sshd as in sge 6.1?
Thanks again -- Jaime Perea El Jueves, 2 de Octubre de 2008, Reuti escribió: > Am 02.10.2008 um 16:12 schrieb Jaime Perea: > > Hi again, thanks for the answer > > > > Actually I took the definition of the pe from the openmpi > > webpage, in my case > > > > qconf -sp orte > > pe_name orte > > slots 24 > > user_lists NONE > > xuser_lists NONE > > start_proc_args /bin/true > > stop_proc_args /bin/true > > allocation_rule $round_robin > > control_slaves TRUE > > job_is_first_task TRUE > > urgency_slots min > > accounting_summary FALSE > > > > Our sge is version 6.2 and openmpi was configured with > > the --with-sge switch of course. > > In SGE 6.2 two types of remote startup are implemented. Which one are > you using (builtin or the former settings for each command) in the > SGE configuration? > > -- Reuti > > > Regards > > > > -- > > Jaime Perea > > > > El Jueves, 2 de Octubre de 2008, Reuti escribió: > >> Hi, > >> > >> Am 02.10.2008 um 15:37 schrieb Jaime Perea: > >>> Hello, > >>> > >>> I am having some problems with a combination of openmpi+sge6.2 > >>> > >>> Currently I'm working with the 1.3a1r19666 openmpi release and the > >> > >> AFAIK, you have to enable SGE support in Open MPI 1.3 during its > >> compilation. > >> > >>> myrinet gm libraries (2.1.19) but the problem was the same with the > >>> prior 1.3 version. In short, I'm able to send jobs to a que via > >>> qrsh, > >>> more or less this way, > >>> > >>> qrsh -cwd -V -q para -pe orte 6 mpirun -np 6 ctiming > >> > >> It should also work without specifying the number of slots a second > >> time, i.e.: > >> > >> qrsh -cwd -V -q para -pe orte 6 mpirun ctiming > >> > >>> ctiming is a small test program and in this way it works, but if I > >>> try to > >>> send the same task by using qsub on a script like this one > >>> > >>> #!/bin/sh > >>> #$ -pe orte 6 > >> > >> This PE has just /bin/true for start-/stop_proc_args? > >> > >>> #$ -q para > >>> #$ -cwd > >>> # > >>> mpirun -np $NSLOTS /model/jaime/ctiming > >> > >> mpirun /model/jaime/ctiming > >> > >>> It fails with a message like this, > >>> .............. > >>> > >>> error reading job context from "qlogin_starter" > >> > >> qlogin_starter should of course only be started with a qlogin command > >> in SGE. > >> > >>> -------------------------------------------------------------------- > >>> -- > >>> ---- > >>> A daemon (pid 11207) died unexpectedly with status 1 while > >>> attempting > >>> to launch so we are aborting. > >>> > >>> There may be more information reported by the environment (see > >>> above). > >>> > >>> This may be because the daemon was unable to find all the needed > >>> shared > >>> libraries on the remote node. You may set your LD_LIBRARY_PATH to > >>> have the > >>> location of the shared libraries on the remote nodes and this will > >>> automatically be forwarded to the remote nodes. > >>> > >>> ............. > >>> > >>> I know that LD_LIBRARY_PATH is not the problem, since I checked > >>> that all > >>> the environment is present.... any idea? > >>> > >>> For previous releases of the sge and openmpi I was able to do them > >>> work > >>> together with a few wrappers, > >> > >> Which version of SGE are you using? > >> > >> -- Reuti > >> > >>> but now the integration looks much better! > >>> This happen only when sending openmpi jobs. > >>> > >>> Thanks and all the best > >>> > >>> --- > >>> > >>> Jaime D. Perea Duarte. <jaime at iaa dot es> > >>> Linux registered user #10472 > >>> > >>> Dep. Astrofisica Extragalactica. > >>> Instituto de Astrofisica de Andalucia (CSIC) > >>> Apdo. 3004, 18080 Granada, Spain. > >>> _______________________________________________ > >>> users mailing list > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> _______________________________________________ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
