Hi again, thanks for the answer Actually I took the definition of the pe from the openmpi webpage, in my case
qconf -sp orte pe_name orte slots 24 user_lists NONE xuser_lists NONE start_proc_args /bin/true stop_proc_args /bin/true allocation_rule $round_robin control_slaves TRUE job_is_first_task TRUE urgency_slots min accounting_summary FALSE Our sge is version 6.2 and openmpi was configured with the --with-sge switch of course. Regards -- Jaime Perea El Jueves, 2 de Octubre de 2008, Reuti escribió: > Hi, > > Am 02.10.2008 um 15:37 schrieb Jaime Perea: > > Hello, > > > > I am having some problems with a combination of openmpi+sge6.2 > > > > Currently I'm working with the 1.3a1r19666 openmpi release and the > > AFAIK, you have to enable SGE support in Open MPI 1.3 during its > compilation. > > > myrinet gm libraries (2.1.19) but the problem was the same with the > > prior 1.3 version. In short, I'm able to send jobs to a que via qrsh, > > more or less this way, > > > > qrsh -cwd -V -q para -pe orte 6 mpirun -np 6 ctiming > > It should also work without specifying the number of slots a second > time, i.e.: > > qrsh -cwd -V -q para -pe orte 6 mpirun ctiming > > > ctiming is a small test program and in this way it works, but if I > > try to > > send the same task by using qsub on a script like this one > > > > #!/bin/sh > > #$ -pe orte 6 > > This PE has just /bin/true for start-/stop_proc_args? > > > #$ -q para > > #$ -cwd > > # > > mpirun -np $NSLOTS /model/jaime/ctiming > > mpirun /model/jaime/ctiming > > > It fails with a message like this, > > .............. > > > > error reading job context from "qlogin_starter" > > qlogin_starter should of course only be started with a qlogin command > in SGE. > > > ---------------------------------------------------------------------- > > ---- > > A daemon (pid 11207) died unexpectedly with status 1 while attempting > > to launch so we are aborting. > > > > There may be more information reported by the environment (see above). > > > > This may be because the daemon was unable to find all the needed > > shared > > libraries on the remote node. You may set your LD_LIBRARY_PATH to > > have the > > location of the shared libraries on the remote nodes and this will > > automatically be forwarded to the remote nodes. > > > > ............. > > > > I know that LD_LIBRARY_PATH is not the problem, since I checked > > that all > > the environment is present.... any idea? > > > > For previous releases of the sge and openmpi I was able to do them > > work > > together with a few wrappers, > > Which version of SGE are you using? > > -- Reuti > > > but now the integration looks much better! > > This happen only when sending openmpi jobs. > > > > Thanks and all the best > > > > --- > > > > Jaime D. Perea Duarte. <jaime at iaa dot es> > > Linux registered user #10472 > > > > Dep. Astrofisica Extragalactica. > > Instituto de Astrofisica de Andalucia (CSIC) > > Apdo. 3004, 18080 Granada, Spain. > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
