Shouldn't mpicc always link system libraries (like -ldl and -lsysfs) dynamically?
Scott Weitzenkamp SQA and Release Manager Server Virtualization Business Unit Cisco Systems > -----Original Message----- > From: users-boun...@open-mpi.org > [mailto:users-boun...@open-mpi.org] On Behalf Of Josh England > Sent: Friday, October 13, 2006 3:53 PM > To: Open MPI Users > Subject: [OMPI users] problem building static w/ 1.1.2_rc4 > > Hi, > > I'm trying to statically compile a simple program, but have run into > some difficulties so far. Trying with my own link line I get many > complaints about symbols being redefined: > > [root@dlogin2 examples]# gcc -static -o cpi cpi.c > -I/apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/include > -L/apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib > -L/apps/torque/lib -L/usr/ofed/lib64 -lmpi -lopal -ldl -lpthread -lrt > -lorte -lopal -ltorque -lutil -libverbs -lsysfs -lm > > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(ltdl.o)(.text+0x2ef): In function `sys_dl_open': > : warning: Using 'dlopen' in statically linked applications > requires at > runtime the shared libraries from the glibc version used for linking > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > liborte.a(sys_info.o)(.text+0xa2): In function `orte_sys_info': > : warning: Using 'getpwuid' in statically linked applications requires > at runtime the shared libraries from the glibc version used > for linking > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(if.o)(.text+0x5d9): In function `opal_ifaddrtoname': > : warning: Using 'gethostbyname' in statically linked applications > requires at runtime the shared libraries from the glibc > version used for > linking > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x1880): In function `free': > : multiple definition of `free' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x3a8a): first defined here > /usr/bin/ld: Warning: size of symbol `free' changed from 231 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 255 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x38d0): In function `malloc': > : multiple definition of `malloc' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x2fd5): first defined here > /usr/bin/ld: Warning: size of symbol `malloc' changed from 319 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 461 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x3fb0): In function `realloc': > : multiple definition of `realloc' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x3b71): first defined here > /usr/bin/ld: Warning: size of symbol `realloc' changed from 448 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 783 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x4c0): In function `_int_new_arena': > : multiple definition of `_int_new_arena' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x352): first defined here > /usr/bin/ld: Warning: size of symbol `_int_new_arena' changed from 242 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 224 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0xff0): In function `_int_free': > : multiple definition of `_int_free' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x113a): first defined here > /usr/bin/ld: Warning: size of symbol `_int_free' changed from 856 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 1897 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x1980): In function `_int_malloc': > : multiple definition of `_int_malloc' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x1b0a): first defined here > /usr/bin/ld: Warning: size of symbol `_int_malloc' changed from 3193 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 3548 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x2840): In function `_int_memalign': > : multiple definition of `_int_memalign' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x28b9): first defined here > /usr/bin/ld: Warning: size of symbol `_int_memalign' changed from 464 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 524 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x2a50): In function `_int_valloc': > : multiple definition of `_int_valloc' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x3d71): first defined here > /usr/bin/ld: Warning: size of symbol `_int_valloc' changed from 69 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 71 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x2c10): In function `_int_realloc': > : multiple definition of `_int_realloc' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x2cd8): first defined here > /usr/bin/ld: Warning: size of symbol `_int_realloc' changed from 765 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 1273 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o)(.text+0x42c0): In function `__malloc_check_init': > : multiple definition of `__malloc_check_init' > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o)(.text+0x631): first defined here > /usr/bin/ld: Warning: size of symbol `__malloc_check_init' > changed from > 141 > in > /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/ > libopal.a(lt1-malloc.o) to 164 in > /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc. > a(malloc.o) > collect2: ld returned 1 exit status > > > When I try mpicc, its seemingly unable to find some symbols, > even when I > add the right library: > > [root@dlogin2 examples]# mpicc -static -o cpi cpi.c > -L/usr/lib64 -lsysfs > ... > ... Same 'multiple definition' stuff as above, followed by: > ... > /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0 > x23b): In > function `ibverbs_init': > : undefined reference to `sysfs_open_class' > /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0 > x2d0): In > function `ibverbs_init': > : undefined reference to `sysfs_get_class_devices' > /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0 > x2e4): In > function `ibverbs_init': > : undefined reference to `dlist_start' > /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0 > x2f1): In > function `ibverbs_init': > : undefined reference to `_dlist_mark_move' > /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0 > x334): In > function `ibverbs_init': > : undefined reference to `sysfs_open_class_device' > collect2: ld returned 1 exit status > > [root@dlogin2 examples]# nm /usr/lib64/libsysfs.a |grep > sysfs_open_class_device > > 0000000000000d60 T sysfs_open_class_device > 0000000000000170 T sysfs_open_class_device_path > > > I configured ompi with '--with-openib=/usr/ofed --with-tm=/apps/torque > --enable-static --without-libnuma' . > > Is there something I missed doing in order to be able to > compile static > binaries? Any help is greatly appreciated. > > -JE > > -- > > ----------------------------------------------- > Josh England > Sandia National Laboratory, Albuquerque, NM > Infrastructure Computing Systems > email: jjen...@sandia.gov > phone: (505) 284-0963 > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users >
