Hi, I'm trying to statically compile a simple program, but have run into some difficulties so far. Trying with my own link line I get many complaints about symbols being redefined:
[root@dlogin2 examples]# gcc -static -o cpi cpi.c -I/apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/include -L/apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib -L/apps/torque/lib -L/usr/ofed/lib64 -lmpi -lopal -ldl -lpthread -lrt -lorte -lopal -ltorque -lutil -libverbs -lsysfs -lm /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(ltdl.o)(.text+0x2ef): In function `sys_dl_open': : warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/liborte.a(sys_info.o)(.text+0xa2): In function `orte_sys_info': : warning: Using 'getpwuid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(if.o)(.text+0x5d9): In function `opal_ifaddrtoname': : warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x1880): In function `free': : multiple definition of `free' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x3a8a): first defined here /usr/bin/ld: Warning: size of symbol `free' changed from 231 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 255 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x38d0): In function `malloc': : multiple definition of `malloc' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x2fd5): first defined here /usr/bin/ld: Warning: size of symbol `malloc' changed from 319 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 461 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x3fb0): In function `realloc': : multiple definition of `realloc' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x3b71): first defined here /usr/bin/ld: Warning: size of symbol `realloc' changed from 448 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 783 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x4c0): In function `_int_new_arena': : multiple definition of `_int_new_arena' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x352): first defined here /usr/bin/ld: Warning: size of symbol `_int_new_arena' changed from 242 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 224 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0xff0): In function `_int_free': : multiple definition of `_int_free' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x113a): first defined here /usr/bin/ld: Warning: size of symbol `_int_free' changed from 856 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 1897 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x1980): In function `_int_malloc': : multiple definition of `_int_malloc' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x1b0a): first defined here /usr/bin/ld: Warning: size of symbol `_int_malloc' changed from 3193 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 3548 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x2840): In function `_int_memalign': : multiple definition of `_int_memalign' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x28b9): first defined here /usr/bin/ld: Warning: size of symbol `_int_memalign' changed from 464 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 524 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x2a50): In function `_int_valloc': : multiple definition of `_int_valloc' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x3d71): first defined here /usr/bin/ld: Warning: size of symbol `_int_valloc' changed from 69 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 71 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x2c10): In function `_int_realloc': : multiple definition of `_int_realloc' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x2cd8): first defined here /usr/bin/ld: Warning: size of symbol `_int_realloc' changed from 765 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 1273 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o)(.text+0x42c0): In function `__malloc_check_init': : multiple definition of `__malloc_check_init' /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o)(.text+0x631): first defined here /usr/bin/ld: Warning: size of symbol `__malloc_check_init' changed from 141 in /apps/x86_64/mpi/openmpi/gcc-3.4.6/openmpi-1.1.2_rc4-ofed/lib/libopal.a(lt1-malloc.o) to 164 in /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/libc.a(malloc.o) collect2: ld returned 1 exit status When I try mpicc, its seemingly unable to find some symbols, even when I add the right library: [root@dlogin2 examples]# mpicc -static -o cpi cpi.c -L/usr/lib64 -lsysfs ... ... Same 'multiple definition' stuff as above, followed by: ... /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0x23b): In function `ibverbs_init': : undefined reference to `sysfs_open_class' /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0x2d0): In function `ibverbs_init': : undefined reference to `sysfs_get_class_devices' /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0x2e4): In function `ibverbs_init': : undefined reference to `dlist_start' /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0x2f1): In function `ibverbs_init': : undefined reference to `_dlist_mark_move' /usr/ofed/lib64/libibverbs.a(src_libibverbs_la-init.o)(.text+0x334): In function `ibverbs_init': : undefined reference to `sysfs_open_class_device' collect2: ld returned 1 exit status [root@dlogin2 examples]# nm /usr/lib64/libsysfs.a |grep sysfs_open_class_device 0000000000000d60 T sysfs_open_class_device 0000000000000170 T sysfs_open_class_device_path I configured ompi with '--with-openib=/usr/ofed --with-tm=/apps/torque --enable-static --without-libnuma' . Is there something I missed doing in order to be able to compile static binaries? Any help is greatly appreciated. -JE -- ----------------------------------------------- Josh England Sandia National Laboratory, Albuquerque, NM Infrastructure Computing Systems email: jjen...@sandia.gov phone: (505) 284-0963
