Hi, > Am 19.04.2017 um 04:27 schrieb John_Tai <john_...@smics.com>: > > I have found the culprit. It was because shell in queue was set to /bin/csh. > I changed it to /bin/sh and it's working now. Though I don't know why.
What is the setting of shell_startup_mode – POSIX_COMPLIANT? Different shells read different profile files. Maybe the -V settings was simply overridden by something it found in the profile. With the wrong shell selected, the script will most likely crash when feed to the wrong interpreter. > Now how do I set the default shell for new queues? I didn't see it in the > cluster config. There is none. The default for a new queue is /bin/csh, but how often do you create new cluster queues? Most of the time I set "shell_startuup_mode unix_behavior" anyway by hand when creating a new queue. -- Reuti > -----Original Message----- > From: Reuti [mailto:re...@staff.uni-marburg.de] > Sent: Tuesday, April 18, 2017 8:57 > To: John_Tai > Cc: users@gridengine.org > Subject: Re: [gridengine users] qsub EDA tool > > Hi, > >> Am 18.04.2017 um 10:42 schrieb John_Tai <john_...@smics.com>: >> >> Picking up an old thread. >> >> I ran command qsub -V -b y -cwd -now n -j y env and in the output log it >> doesn't contain the path in the current shell, which should be: >> --------------------------------------------- >> # echo $path > > $path ≠ $PATH, is this a typo. The ":" are replaced by a " "? > > >> /home/sge/sge6.2u6/bin/lx24-amd64 >> /tools/cadence/virtuoso/IC617.500.0900_20170202/tools/dracula/bin >> /tools/cadence/virtuoso/IC617.500.0900_20170202/tools/dfII/bin >> /tools/cadence/virtuoso/IC617.500.0900_20170202/tools/bin >> /tools/cadence/virtuoso/IC617.500.0900_20170202/bin >> /home/sge/sge6.1/bin/lx24-amd64 /home/sge/sge6.2u6/bin/lx24-amd64 /bin >> /usr/bin /usr/local/bin /usr/X11R6/bin /home/johnt/bin . /home/sge/bin >> /home/DI/TOOLS/bin . /home/IPproj/IOproject/quan/Flatten >> ----------------------------------------------- >> >> >> >> Instead this is the output: >> ------------------------------------------------ >> johnt@ibm044: /home/johnt/temp # more env.o5032117 |grep -i path >> MANPATH=/home/sge/sge6.2u6/man:/usr/share/man:/usr/X11R6/man:/usr/kerb >> eros/man >> PATH=/home/sge/sge6.2u6/bin/lx24-amd64:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/johnt/bin:. > > What is strange is, that the scratch directory is completely missing here. > This should usually be included (to look for any wrappers therein). > > >> OPERA_PLUGIN_PATH=/usr/java/jre1.5.0_01/plugin/i386/ns7 >> NPX_PLUGIN_PATH=/usr/java/jre1.5.0_01/plugin/i386/ns7 >> LD_LIBRARY_PATH=/usr/lib:/usr/local/lib:/usr/lib64:/usr/local/lib64 >> SGE_BINARY_PATH=/home/sge/sge6.2u6/bin/lx24-amd64 >> SGE_O_PATH=/home/sge/sge6.2u6/bin/lx24-amd64:/tools/cadence/virtuoso/I >> C617.500.0900_20170202/tools/dracula/bin:/tools/cadence/virtuoso/IC617 >> .500.0900_20170202/tools/dfII/bin:/tools/cadence/virtuoso/IC617.500.09 >> 00_20170202/tools/bin:/tools/cadence/virtuoso/IC617.500.0900_20170202/ >> bin:/home/sge/sge6.1/bin/lx24-amd64:/home/sge/sge6.2u6/bin/lx24-amd64: >> /bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/johnt/bin:.:/home/sg >> e/bin:/home/DI/TOOLS/bin:.:/home/IPproj/IOproject/quan/Flatten >> SGE_STDIN_PATH=/dev/null >> SGE_STDOUT_PATH=/home/johnt/temp/env.o5032117 >> SGE_STDERR_PATH=/home/johnt/temp/env.o5032117 >> SGE_CWD_PATH=/home/johnt/temp >> johnt@ibm044: /home/johnt/temp # >> -------------------------------------------------------------- > > What is sourced and set in a batch job depends on the shell_start_mode in the > queue configuration. > > It might also be the case, that something is set by /etc/profile or > /etc/profile.local which is not available on the exechosts. > > I remember this: http://gridengine.org/pipermail/users/2012-April/003322.html > > -- Reuti > ________________________________ > > This email (including its attachments, if any) may be confidential and > proprietary information of SMIC, and intended only for the use of the named > recipient(s) above. Any unauthorized use or disclosure of this email is > strictly prohibited. If you are not the intended recipient(s), please notify > the sender immediately and delete this email from your computer. >
signature.asc
Description: Message signed with OpenPGP using GPGMail
_______________________________________________ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users
