Hi, > Am 18.04.2017 um 10:42 schrieb John_Tai <john_...@smics.com>: > > Picking up an old thread. > > I ran command qsub -V -b y -cwd -now n -j y env and in the output log it > doesn't contain the path in the current shell, which should be: > --------------------------------------------- > # echo $path
$path ≠ $PATH, is this a typo. The ":" are replaced by a " "? > /home/sge/sge6.2u6/bin/lx24-amd64 > /tools/cadence/virtuoso/IC617.500.0900_20170202/tools/dracula/bin > /tools/cadence/virtuoso/IC617.500.0900_20170202/tools/dfII/bin > /tools/cadence/virtuoso/IC617.500.0900_20170202/tools/bin > /tools/cadence/virtuoso/IC617.500.0900_20170202/bin > /home/sge/sge6.1/bin/lx24-amd64 /home/sge/sge6.2u6/bin/lx24-amd64 /bin > /usr/bin /usr/local/bin /usr/X11R6/bin /home/johnt/bin . /home/sge/bin > /home/DI/TOOLS/bin . /home/IPproj/IOproject/quan/Flatten > ----------------------------------------------- > > > > Instead this is the output: > ------------------------------------------------ > johnt@ibm044: /home/johnt/temp # more env.o5032117 |grep -i path > MANPATH=/home/sge/sge6.2u6/man:/usr/share/man:/usr/X11R6/man:/usr/kerberos/man > PATH=/home/sge/sge6.2u6/bin/lx24-amd64:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/johnt/bin:. What is strange is, that the scratch directory is completely missing here. This should usually be included (to look for any wrappers therein). > OPERA_PLUGIN_PATH=/usr/java/jre1.5.0_01/plugin/i386/ns7 > NPX_PLUGIN_PATH=/usr/java/jre1.5.0_01/plugin/i386/ns7 > LD_LIBRARY_PATH=/usr/lib:/usr/local/lib:/usr/lib64:/usr/local/lib64 > SGE_BINARY_PATH=/home/sge/sge6.2u6/bin/lx24-amd64 > SGE_O_PATH=/home/sge/sge6.2u6/bin/lx24-amd64:/tools/cadence/virtuoso/IC617.500.0900_20170202/tools/dracula/bin:/tools/cadence/virtuoso/IC617.500.0900_20170202/tools/dfII/bin:/tools/cadence/virtuoso/IC617.500.0900_20170202/tools/bin:/tools/cadence/virtuoso/IC617.500.0900_20170202/bin:/home/sge/sge6.1/bin/lx24-amd64:/home/sge/sge6.2u6/bin/lx24-amd64:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/johnt/bin:.:/home/sge/bin:/home/DI/TOOLS/bin:.:/home/IPproj/IOproject/quan/Flatten > SGE_STDIN_PATH=/dev/null > SGE_STDOUT_PATH=/home/johnt/temp/env.o5032117 > SGE_STDERR_PATH=/home/johnt/temp/env.o5032117 > SGE_CWD_PATH=/home/johnt/temp > johnt@ibm044: /home/johnt/temp # > -------------------------------------------------------------- What is sourced and set in a batch job depends on the shell_start_mode in the queue configuration. It might also be the case, that something is set by /etc/profile or /etc/profile.local which is not available on the exechosts. I remember this: http://gridengine.org/pipermail/users/2012-April/003322.html -- Reuti
signature.asc
Description: Message signed with OpenPGP using GPGMail
_______________________________________________ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users
