I think use_cgroups is still an experimental feature, isn't it? Are you already using cgroups outside of the GridEngine context? Have you tried this script in a cgroup context without GridEngine and does it do what you want it to do? Seems to me there's a lot of configuration that needs to be done outside of GridEngine before you can use it with GridEngine.
Mfg, Juan Jimenez System Administrator, HPC MDC Berlin / IT-Dept. Tel.: +49 30 9406 2800 ________________________________________ From: users-boun...@gridengine.org [users-boun...@gridengine.org] on behalf of Joshua Baker-LePain [j...@salilab.org] Sent: Friday, March 24, 2017 20:31 To: users Subject: [gridengine users] Some commands not generating any ouput when USE_CGROUPS set I have a very odd issue with gridengine-8.1.9 on a new CentOS-7 cluster I'm setting up. Certain very basic commands don't generate any output when USE_CGROUPS is set. For example, here is a simple job script trying to get basic info about a node: #!/bin/bash # #$ -S /bin/bash #$ -o $HOME/tmp/sgetmp #$ -e $HOME/tmp/sgetmp #$ -V hostname ldconfig -p ps aufx qstat -j $JOB_ID After running, the SGE output file in ~/tmp/sgetmp contains the output of the last 2 commands (ps and qstat), but not the first 2 (hostname and ldconfig). The error file is empty. The order of the commands doesn't matter -- no matter what, hostname and ldconfig don't generate any output. Redirecting the output to a local file doesn't help. Calling the commands with their absolute paths doesn't help. However, if I remove "USE_GROUPS" from the execd_params, then I get the normal output of those commands. Is this expected behavior? Or is something wonky with the cgroups here? Thanks for any insights. -- Joshua Baker-LePain QB3 Shared Cluster Sysadmin UCSF _______________________________________________ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users _______________________________________________ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users
