I have a very odd issue with gridengine-8.1.9 on a new CentOS-7 cluster
I'm setting up. Certain very basic commands don't generate any output
when USE_CGROUPS is set. For example, here is a simple job script trying
to get basic info about a node:
#!/bin/bash
#
#$ -S /bin/bash
#$ -o $HOME/tmp/sgetmp
#$ -e $HOME/tmp/sgetmp
#$ -V
hostname
ldconfig -p
ps aufx
qstat -j $JOB_ID
After running, the SGE output file in ~/tmp/sgetmp contains the output of
the last 2 commands (ps and qstat), but not the first 2 (hostname and
ldconfig). The error file is empty. The order of the commands doesn't
matter -- no matter what, hostname and ldconfig don't generate any output.
Redirecting the output to a local file doesn't help. Calling the commands
with their absolute paths doesn't help. However, if I remove "USE_GROUPS"
from the execd_params, then I get the normal output of those commands.
Is this expected behavior? Or is something wonky with the cgroups here?
Thanks for any insights.
--
Joshua Baker-LePain
QB3 Shared Cluster Sysadmin
UCSF
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