Hi Jen, Sorry for not seeing this any sooner - I don't have any experience with Macs and so don't have a lot of suggestions here. Hopefully others do and can share or have already said something...
Good luck, Ted On Mon, Sep 11, 2017 at 4:54 PM, Jennifer Wilson [email protected] [umls-similarity] <[email protected]> wrote: > > > Hi Bridget and Raviteja, > > Thanks for this resource, it seems super cool! I am personally working on > a Mac and attempted installing the .exe using WineBottler. The mmlite > software doesn't yet work for me - do you have any suggestions for making > it Mac-friendly? > > Thanks, > > On Thu, Sep 7, 2017 at 10:40 AM, Bridget McInnes [email protected] > [umls-similarity] <[email protected]> wrote: > >> >> >> Hello everyone, >> >> >> Here is an email from Ravi about MetaMap Lite excel : >> >> >> >> The program is available at >>> tinyurl.com/mmlite-excel >>> It just points to my DropBox, at the moment. >>> >>> It comes packaged with UMLS level zero subset for licensing reasons. >>> But you can easily swap it out for the full UMLS subset from MetaMapLite >>> distribution. >>> >>> Let me know, if you have any issues. >>> >>> Ravi Teja. >> >> >> >> >> I have cced him on this email as well so that you have his contact >> information. >> >> >> Best regards, >> >> >> Bridget >> >> On Thu, Sep 7, 2017 at 8:37 AM, Bridget McInnes <[email protected]> >> wrote: >> >>> Hello Jennifer, >>> >>> Like Ted mentioned, the UMLS-Similarity package requires that the term >>> be located in the UMLS as an exact match. When I deal with terms, I >>> typically use metamap to identify the CUIs of a particular term that I am >>> looking for. There is a nice program recently released with an xcel plug in >>> written by Ravi Bhupatiraju at NLM. Here is the poster description: >>> >>> https://mor.nlm.nih.gov/pubs/pdf/2017-medinfo-rb-poster.pdf >>> >>> >>> and a link to MetaMapLite web page. >>> >>> https://metamap.nlm.nih.gov/MetaMapLite.shtml >>> >>> >>> I hope this might help! >>> >>> Best regards, >>> >>> Bridget >>> >>> On Tue, Sep 5, 2017 at 1:02 PM, Jennifer Wilson [email protected] >>> [umls-similarity] <[email protected]> wrote: >>> >>>> >>>> >>>> Hey Ted, >>>> >>>> Thanks again for looking at this. Again, any and all advice are >>>> appreciated. Right now, I'm doing a less-than-ideal approach of querying >>>> for similarity, and then if there is none, I do a back-up check by looking >>>> for overlapping words. This means I can catch "Diabetes" and "type 2 >>>> diabetes" but it does require manual curation to make sure I'm not getting >>>> erroneous overlaps! >>>> >>>> Best, >>>> >>>> On Sun, Sep 3, 2017 at 7:52 PM, Ted Pedersen [email protected] >>>> [umls-similarity] <[email protected]> wrote: >>>> >>>>> >>>>> >>>>> Hi Jen, >>>>> >>>>> I'm going to answer your question in a few notes maybe over the next >>>>> few days...so your first problem with finding a term is not unusual - >>>>> sometimes small variations in a term can cause a lookup to fail. I usually >>>>> try to work with Cuis as a result. In your example for whatever reason the >>>>> (t2d) seems to be causing a problem - when I omit that things seem to work >>>>> ok... >>>>> >>>>> More soon! >>>>> Ted >>>>> >>>>> tpederse@maraca:~$ getAssociatedCuis.pl 'type 2 diabetes mellitus' >>>>> >>>>> >>>>> UMLS-Interface Configuration Information: >>>>> (Default Information - no config file) >>>>> >>>>> Sources (SAB): >>>>> MSH >>>>> Relations (REL): >>>>> PAR >>>>> CHD >>>>> >>>>> Sources (SABDEF): >>>>> UMLS_ALL >>>>> Relations (RELDEF): >>>>> UMLS_ALL >>>>> >>>>> >>>>> The CUIs associated with type 2 diabetes mellitus are: >>>>> 1. [email protected] >>>>> tpederse@maraca:~$ getAssociatedCuis.pl 'type 2 diabetes mellitus >>>>> (t2d)' >>>>> >>>>> >>>>> UMLS-Interface Configuration Information: >>>>> (Default Information - no config file) >>>>> >>>>> Sources (SAB): >>>>> MSH >>>>> Relations (REL): >>>>> PAR >>>>> CHD >>>>> >>>>> Sources (SABDEF): >>>>> UMLS_ALL >>>>> Relations (RELDEF): >>>>> UMLS_ALL >>>>> >>>>> >>>>> No CUIs are associated with type 2 diabetes mellitus (t2d). >>>>> tpederse@maraca:~$ getAssociatedCuis.pl 'type 2 diabetes mellitus' >>>>> >>>>> >>>>> UMLS-Interface Configuration Information: >>>>> (Default Information - no config file) >>>>> >>>>> Sources (SAB): >>>>> MSH >>>>> Relations (REL): >>>>> PAR >>>>> CHD >>>>> >>>>> Sources (SABDEF): >>>>> UMLS_ALL >>>>> Relations (RELDEF): >>>>> UMLS_ALL >>>>> >>>>> >>>>> The CUIs associated with type 2 diabetes mellitus are: >>>>> 1. C0011860 >>>>> tpederse@maraca:~$ getChildren.pl 'type 2 diabetes mellitus' >>>>> >>>>> >>>>> UMLS-Interface Configuration Information: >>>>> (Default Information - no config file) >>>>> >>>>> Sources (SAB): >>>>> MSH >>>>> Relations (REL): >>>>> PAR >>>>> CHD >>>>> >>>>> Sources (SABDEF): >>>>> UMLS_ALL >>>>> Relations (RELDEF): >>>>> UMLS_ALL >>>>> >>>>> >>>>> The children of type 2 diabetes mellitus (C0011860) are: >>>>> lipoatrophic diabetes (C0011859) >>>>> tpederse@maraca:~$ getChildren.pl 'type 2 diabetes mellitus (t2d)' >>>>> >>>>> >>>>> UMLS-Interface Configuration Information: >>>>> (Default Information - no config file) >>>>> >>>>> Sources (SAB): >>>>> MSH >>>>> Relations (REL): >>>>> PAR >>>>> CHD >>>>> >>>>> Sources (SABDEF): >>>>> UMLS_ALL >>>>> Relations (RELDEF): >>>>> UMLS_ALL >>>>> >>>>> >>>>> Input type 2 diabetes mellitus (t2d) does not exist in this view of >>>>> the UMLS. >>>>> >>>>> >>>>> On Thu, Aug 31, 2017 at 4:03 PM, Jennifer Wilson >>>>> [email protected] [umls-similarity] < >>>>> [email protected]> wrote: >>>>> >>>>>> >>>>>> >>>>>> Hi Ted, >>>>>> >>>>>> You've been incredibly helpful, on this whole project. Thanks for >>>>>> that. >>>>>> >>>>>> Part of my problem was that I was avoiding installing the full UMLS >>>>>> distribution because of storage, and then had a lot of trouble getting it >>>>>> downloaded, installed, and set up on my computer! But having access to >>>>>> the >>>>>> UMLS::Interface and UMLS::Similarity scripts is really helpful. >>>>>> >>>>>> I'm now at a more specific use of the UMLS in my project. I have a >>>>>> list of drugs with their disease indications (*most *map to a CUI >>>>>> term) and then for each drug I have predicted a list of disease for which >>>>>> the drugs could be used. I want to know "how semantically similar" are my >>>>>> predictions to the original diseases (to check how often my algorithm is >>>>>> "right"). >>>>>> >>>>>> There are few bugs in that for some reason, some diseases return an >>>>>> error that a CUI doesn't exist, even though, I can find a CUI for the >>>>>> disease in my umls database: >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> *getChildren.pl 'type 2 diabetes mellitus (t2d)'...Input type 2 >>>>>> diabetes mellitus (t2d) does not exist in this view of the UMLS.* >>>>>> I also don't always get a match between diseases that I think are >>>>>> semantically similar, is this just a product of how the hierarchy works? >>>>>> I >>>>>> would like to capture these as matches if possible! >>>>>> >>>>>> >>>>>> *Hormone receptor positive malignant neoplasm of breast (C1562029) & >>>>>> Breast Carcinoma (C0678222) = -1* >>>>>> Also, because I am new to perl, I have been using the --infile option >>>>>> (for instance with getAssociatedCuis.pl script), piping the output to a >>>>>> text file and then using Python to awkwardly extract the disease -> CUI >>>>>> mappings. Is there a better way to do this? Ideally, I could implement a >>>>>> tiered system for checking matches where I look for an exact match, look >>>>>> for a matched parent or child term, and then as a last resort look for >>>>>> matched words (because the of the breast cancer example). >>>>>> >>>>>> Any and all advice is much appreciated. Thank you! >>>>>> >>>>>> On Tue, Aug 22, 2017 at 5:49 AM, [email protected] >>>>>> [umls-similarity] <[email protected]> wrote: >>>>>> >>>>>>> >>>>>>> >>>>>>> Hi Jen, >>>>>>> >>>>>>> Here are some ideas about using some of the commands in the >>>>>>> installed version of UMLS::Similarity to find nearby branches of a given >>>>>>> term of CUI. A lot more information about the different commands >>>>>>> available >>>>>>> can be found at : >>>>>>> >>>>>>> http://search.cpan.org/dist/UMLS-Interface/ >>>>>>> >>>>>>> I'm not certain how useful this all will be, but wanted to let you >>>>>>> know what I was thinking at least. Please feel free to follow up as >>>>>>> needed. >>>>>>> >>>>>>> >>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl "Diabetes Mellitus" >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>> 1. C0011849 >>>>>>> >>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>> leprechaunism (C0265344) >>>>>>> experimental diabetes mellitus (C0011853) >>>>>>> compl diabetes mellitus (C0342257) >>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>> states, prediabetic (C0362046) >>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>> acidoses, diabetic (C0011880) >>>>>>> >>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>> endocrine system diseases(C0014130) >>>>>>> metabolism disorder, glucose(C1257958) >>>>>>> >>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl >>>>>>> No term was specified on the command line >>>>>>> Usage: getAssociatedCuis.pl [OPTIONS] TERM >>>>>>> Type getAssociatedCuis.pl --help for help. >>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl "Diabetes Mellitus" >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>> 1. C0011849 >>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>> leprechaunism (C0265344) >>>>>>> experimental diabetes mellitus (C0011853) >>>>>>> compl diabetes mellitus (C0342257) >>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>> states, prediabetic (C0362046) >>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>> acidoses, diabetic (C0011880) >>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>> endocrine system diseases(C0014130) >>>>>>> metabolism disorder, glucose(C1257958) >>>>>>> >>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RB >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> No CUIs are associated with diabetes mellitus (C0011849) given the >>>>>>> relation (RB). >>>>>>> >>>>>>> >>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RN >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The related (RN) CUIs to diabetes mellitus (C0011849): >>>>>>> premature aging, okamoto type (C2930860) >>>>>>> lipoatrophy with diabetes, hepatic steatosis, cardiomyopathy, and >>>>>>> leukomelanodermic papules (C2931057) >>>>>>> feigenbaum bergeron richardson syndrome (C2931125) >>>>>>> thiamine responsive megaloblastic anemia syndrome (C0342287) >>>>>>> yorifuji okuno syndrome (C2931296) >>>>>>> extrapyramidal disorder, progressive, with primary hypogonadism, >>>>>>> mental retardation, and alopecia (C0342286) >>>>>>> pancreatic beta cell agenesis with neonatal diabetes mellitus >>>>>>> (C1838655) >>>>>>> photomyoclonus, diabetes mellitus, deafness, nephropathy, and >>>>>>> cerebral dysfunction (C1809475) >>>>>>> furukawa takagi nakao syndrome (C2931765) >>>>>>> diabetes mellitus, neonatal, with congenital hypothyroidism >>>>>>> (C1857775) >>>>>>> diabetes mellitus, transient neonatal, 2 (C1835887) >>>>>>> developmental delay, epilepsy, and neonatal diabetes (C1853564) >>>>>>> mitochondrial myopathy with diabetes (C1839028) >>>>>>> diabetes mellitus, transient neonatal, 3 (C1864623) >>>>>>> diabetes mellitus, insulin-resistant, with acanthosis nigricans >>>>>>> (C0342278) >>>>>>> maturity-onset diabetes of the young, type 7 (C1864839) >>>>>>> mitchell-riley syndrome (C2748662) >>>>>>> hyperproinsulinemia (C0342283) >>>>>>> muscular atrophy, ataxia, retinitis pigmentosa, and diabetes >>>>>>> mellitus (C0342281) >>>>>>> 6q24-related transient neonatal diabetes mellitus (C3711391) >>>>>>> diabetes mellitus, congenital autoimmune (C1857958) >>>>>>> pancreatic and cerebellar agenesis (C1836780) >>>>>>> stimmler syndrome (C1859965) >>>>>>> atherosclerosis, premature, with deafness, nephropathy, diabetes >>>>>>> mellitus, photomyoclonus, and degenerative neurologic disease (C1859596) >>>>>>> diabetes insipidus and mellitus with optic atrophy and deafness, >>>>>>> mitochondrial form (C1838782) >>>>>>> diabetes mellitus, transient neonatal, 1 (C1832386) >>>>>>> pancreatic hypoplasia, congenital, with diabetes mellitus and >>>>>>> congenital heart disease (C1838780) >>>>>>> lymphedema-distichiasis syndrome with renal disease and diabetes >>>>>>> mellitus (C2675066) >>>>>>> diabetes mellitus, permanent neonatal, with neurologic features >>>>>>> (C1833102) >>>>>>> diabetes mellitus, permanent, of infancy (C1833104) >>>>>>> martinez frias syndrome (C1832443) >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>> 1. C0011849 >>>>>>> >>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>> leprechaunism (C0265344) >>>>>>> experimental diabetes mellitus (C0011853) >>>>>>> compl diabetes mellitus (C0342257) >>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>> states, prediabetic (C0362046) >>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>> acidoses, diabetic (C0011880) >>>>>>> >>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>> endocrine system diseases(C0014130) >>>>>>> metabolism disorder, glucose(C1257958) >>>>>>> >>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl >>>>>>> No term was specified on the command line >>>>>>> Usage: getAssociatedCuis.pl [OPTIONS] TERM >>>>>>> Type getAssociatedCuis.pl --help for help. >>>>>>> tpederse@maraca:~$ getAssociatedCuis.pl "Diabetes Mellitus" >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The CUIs associated with Diabetes Mellitus are: >>>>>>> 1. C0011849 >>>>>>> tpederse@maraca:~$ getChildren.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The children of Diabetes mellitus NOS (C0011849) are: >>>>>>> leprechaunism (C0265344) >>>>>>> experimental diabetes mellitus (C0011853) >>>>>>> compl diabetes mellitus (C0342257) >>>>>>> diabetes mellitus, sudden-onset (C0011854) >>>>>>> pregnancy-induced diabetes (C0085207) >>>>>>> states, prediabetic (C0362046) >>>>>>> noninsulin-dependent diabetes mellitus (C0011860) >>>>>>> acidoses, diabetic (C0011880) >>>>>>> tpederse@maraca:~$ getParents.pl C0011849 >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The parents of Diabetes mellitus NOS (C0011849) are: >>>>>>> endocrine system diseases(C0014130) >>>>>>> metabolism disorder, glucose(C1257958) >>>>>>> >>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RB >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> No CUIs are associated with diabetes mellitus (C0011849) given the >>>>>>> relation (RB). >>>>>>> >>>>>>> >>>>>>> tpederse@maraca:~$ getRelated.pl C0011849 RN >>>>>>> >>>>>>> >>>>>>> UMLS-Interface Configuration Information: >>>>>>> (Default Information - no config file) >>>>>>> >>>>>>> Sources (SAB): >>>>>>> MSH >>>>>>> Relations (REL): >>>>>>> PAR >>>>>>> CHD >>>>>>> >>>>>>> Sources (SABDEF): >>>>>>> UMLS_ALL >>>>>>> Relations (RELDEF): >>>>>>> UMLS_ALL >>>>>>> >>>>>>> >>>>>>> The related (RN) CUIs to diabetes mellitus (C0011849): >>>>>>> premature aging, okamoto type (C2930860) >>>>>>> lipoatrophy with diabetes, hepatic steatosis, cardiomyopathy, and >>>>>>> leukomelanodermic papules (C2931057) >>>>>>> feigenbaum bergeron richardson syndrome (C2931125) >>>>>>> thiamine responsive megaloblastic anemia syndrome (C0342287) >>>>>>> yorifuji okuno syndrome (C2931296) >>>>>>> extrapyramidal disorder, progressive, with primary hypogonadism, >>>>>>> mental retardation, and alopecia (C0342286) >>>>>>> pancreatic beta cell agenesis with neonatal diabetes mellitus >>>>>>> (C1838655) >>>>>>> photomyoclonus, diabetes mellitus, deafness, nephropathy, and >>>>>>> cerebral dysfunction (C1809475) >>>>>>> furukawa takagi nakao syndrome (C2931765) >>>>>>> diabetes mellitus, neonatal, with congenital hypothyroidism >>>>>>> (C1857775) >>>>>>> diabetes mellitus, transient neonatal, 2 (C1835887) >>>>>>> developmental delay, epilepsy, and neonatal diabetes (C1853564) >>>>>>> mitochondrial myopathy with diabetes (C1839028) >>>>>>> diabetes mellitus, transient neonatal, 3 (C1864623) >>>>>>> diabetes mellitus, insulin-resistant, with acanthosis nigricans >>>>>>> (C0342278) >>>>>>> maturity-onset diabetes of the young, type 7 (C1864839) >>>>>>> mitchell-riley syndrome (C2748662) >>>>>>> hyperproinsulinemia (C0342283) >>>>>>> muscular atrophy, ataxia, retinitis pigmentosa, and diabetes >>>>>>> mellitus (C0342281) >>>>>>> 6q24-related transient neonatal diabetes mellitus (C3711391) >>>>>>> diabetes mellitus, congenital autoimmune (C1857958) >>>>>>> pancreatic and cerebellar agenesis (C1836780) >>>>>>> stimmler syndrome (C1859965) >>>>>>> atherosclerosis, premature, with deafness, nephropathy, diabetes >>>>>>> mellitus, photomyoclonus, and degenerative neurologic disease (C1859596) >>>>>>> diabetes insipidus and mellitus with optic atrophy and deafness, >>>>>>> mitochondrial form (C1838782) >>>>>>> diabetes mellitus, transient neonatal, 1 (C1832386) >>>>>>> pancreatic hypoplasia, congenital, with diabetes mellitus and >>>>>>> congenital heart disease (C1838780) >>>>>>> lymphedema-distichiasis syndrome with renal disease and diabetes >>>>>>> mellitus (C2675066) >>>>>>> diabetes mellitus, permanent neonatal, with neurologic features >>>>>>> (C1833102) >>>>>>> diabetes mellitus, permanent, of infancy (C1833104) >>>>>>> martinez frias syndrome (C1832443) >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> Jennifer L. Wilson >>>>>> Bioengineering, Stanford University >>>>>> [email protected] / 703.969.3318 <(703)%20969-3318> >>>>>> >>>>>> >>>>> >>>> >>>> >>>> -- >>>> Jennifer L. Wilson >>>> Bioengineering, Stanford University >>>> [email protected] / 703.969.3318 <(703)%20969-3318> >>>> >>>> >>> >> > > > -- > Jennifer L. Wilson > Bioengineering, Stanford University > [email protected] / 703.969.3318 <(703)%20969-3318> > > >
