Have you tried reinstalling ntpdate to check it's really its fault? I don't see how it could create delays when logging in. Also please attach /var/log/daemon.log and ~/.xsession-errors when the problem happens.
** Package changed: gnome-system-tools (Ubuntu) => ntp (Ubuntu) -- You received this bug notification because you are a member of Ubuntu Server Team, which is subscribed to ntp in Ubuntu. https://bugs.launchpad.net/bugs/1015041 Title: Conflict between NTP and NTPDATE To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/ntp/+bug/1015041/+subscriptions -- Ubuntu-server-bugs mailing list Ubuntu-server-bugs@lists.ubuntu.com Modify settings or unsubscribe at: https://lists.ubuntu.com/mailman/listinfo/ubuntu-server-bugs