Here's a script which automates the above:

true && (

set -x

wget 'http://superb-
west.dl.sourceforge.net/sourceforge/primer3/primer3-1.1.3.tar.gz'

tar -xzvf primer3-1.1.3.tar.gz

cd primer3-1.1.3/src/

make all

make test

echo 'PRIMER_NUM_RETURN=11
PRIMER_TASK=pick_left_only
SEQUENCE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
=' | ./primer3_core | tail -20

echo 'PRIMER_NUM_RETURN=1000
PRIMER_TASK=pick_left_only
SEQUENCE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
=' | ./primer3_core | tail -20

) 2>&1 | tee output.txt

-- 
primer3 does not output complete primer name if only choosing left or right 
primers
https://bugs.launchpad.net/bugs/191053
You received this bug notification because you are a member of Ubuntu
Bugs, which is subscribed to Ubuntu.

-- 
ubuntu-bugs mailing list
ubuntu-bugs@lists.ubuntu.com
https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs

Reply via email to