Thank you for your report.

The file you attached is probably not the right one. It was apparently
created on Jan 18th, whereas the strange repair you reported was on Feb
5th. The one you posted might be a consequence of resizing the ntfs
partition from 400GB to 126GB, it is not related to the issue you
reported. The useful one is approximately named Chkdsk201402052053....
(it is named after the date and time it was created).

The data from the LogFile is supposed to mean Windows was not ready to
be fast restarted (unless Microsoft changed the rules).

Also please post the output of (replacing sdxx by your partition 
identification) :
sudo ntfsinfo -fm /dev/sdxx

According to http://ubuntuforums.org/showthread.php?t=2199632 this
problem only occurs in the root directory. Can you make a try in an
inner directory ?

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https://bugs.launchpad.net/bugs/1280574

Title:
  Files modified on NTFS partition are seen as corrupted files in
  Windows

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