@Anton Altaparmakov

> Have you got any 3rd party security related software / antivirus software 
> installed that might be protecting the volume against 
> modifications? If yes what happens if you turn it off?
Yes, I have an antivirus and I already tried turning it off with no luck. 

> Have you got any of the change tracking features enabled in Windows ? If yes 
> what happens if you turn them off?
I don't know what you mean by "change tracking features", could you explain ?

> Perhaps most importantly, would you be happy to create and send us metadata 
> images of the volume in question? Probably 
> most useful to have a "post ntfs-3g write" and "post windows boot after 
> ntfs-3g write". We can give you instructions how to 
> gather the metadata images - note those would expose the names of all your 
> files/directories but none of the content (except 
> for metadata related files).
I have three NTFS partitions (besides the Recovery and Restore partitions) and 
they all have the same problem, do you want the metadata images for any one of 
them ? and will that be very helpful ? If yes, please tell me the instructions

> Do you by any chance have an SSD or hybrid drive that Windows might be using 
> as a boot cache or some such?
I have a 1 TB hard drive with a 24 GB SSD cache.

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https://bugs.launchpad.net/bugs/1280574

Title:
  Files modified on NTFS partition are seen as corrupted files in
  Windows

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