The problem here is clearly that mdadm is being run too early, and is
trying to assemble RAIDs that are not yet complete.

Either mdadm needs to be fixed so that doing this is possible, and
harmless; like it is for lvm, etc.  or the script that calls mdadm needs
to check whether it is safe to call mdadm yet.

-- 
initramfs script: race condition between sata and md
https://launchpad.net/bugs/75681

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